Update shuffler for new flag node syntax #2358

Job	Run time
Validate aux data	28s
Generate base patch test jobs	35s
Validate randomizer settings	27s
Build base patch [US]	2m 43s
Build base patch [US (D-Pad Patch)]	2m 35s
Linting/style checks	3m 10s
Type-checking	51s
Run the shuffler against logic and aux data	35s
Run tests (ubuntu)	43s
Run tests (macos)	39s
Run tests (windows)	1m 30s
Build randomizer (ubuntu)	1m 30s
Build randomizer (macos)	1m 6s
Build randomizer (windows)	2m 39s
Run base patch tests [${{ matrix.module }}] (${{ matrix.rom_variant }})	0s
Run built randomizer executable [ubuntu / US]	22s
Run built randomizer executable [ubuntu / US (D-Pad Patch)]	20s
Run built randomizer executable [macos / US]	24s
Run built randomizer executable [macos / US (D-Pad Patch)]	21s
Run built randomizer executable [windows / US]	43s
Run built randomizer executable [windows / US (D-Pad Patch)]	35s
Publish a release	0s
	22m 16s

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