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| # Changelog | ||
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| ## [0.2.0-beta.1](https://github.com/pinellolab/pyrovelocity/compare/v0.1.3...v0.2.0-beta.1) (2024-01-03) | ||
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| ### Features | ||
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| * add merge queue configuration ([#470](https://github.com/pinellolab/pyrovelocity/issues/470)) ([14c9328](https://github.com/pinellolab/pyrovelocity/commit/14c93287bf46433ff20e9db20974cfa43adfaad9)) | ||
| * **argo:** add build-images workflow ([6697f55](https://github.com/pinellolab/pyrovelocity/commit/6697f552a366ac24244c4a2d2992a945a2c3bf99)) | ||
| * **cid:** init cid workflow ([0482ea9](https://github.com/pinellolab/pyrovelocity/commit/0482ea9dea6f91a59e352c5ca343fb19efc1c012)) | ||
| * **codecov:** init repo config ([d09736c](https://github.com/pinellolab/pyrovelocity/commit/d09736c916ddc7b58d8229d965437a39d648fd74)) | ||
| * **compose:** add compose for jupyter server ([b6a4ce8](https://github.com/pinellolab/pyrovelocity/commit/b6a4ce88afe66da1a090ce773229dfb9578dd219)) | ||
| * **containers:** add pkg and gpu Dockerfiles ([690fa7b](https://github.com/pinellolab/pyrovelocity/commit/690fa7bc5a4252b40a246449aa3de61e6edb4fb1)) | ||
| * **devcontainter:** update configuration for flake ([37475e5](https://github.com/pinellolab/pyrovelocity/commit/37475e51384d803a410553d8584ee3bcd521fbec)) | ||
| * **devshell:** add manual activation script ([36fe896](https://github.com/pinellolab/pyrovelocity/commit/36fe896130fd9362397d43f463ca5bc078ad5c2f)) | ||
| * **docs:** add repo `CHANGELOG.md` to history ([86625a8](https://github.com/pinellolab/pyrovelocity/commit/86625a8407e8aa9c9ff79c83ae3b593103c1d8ad)) | ||
| * **flake:** add CUDA env vars to devcontainerConfig ([e004597](https://github.com/pinellolab/pyrovelocity/commit/e0045979aacb2f1eb6bb9345f27d8cb73f25f6e6)) | ||
| * **flake:** init ([8a11673](https://github.com/pinellolab/pyrovelocity/commit/8a116737ba9533e9e8bdcf476a337a49c054f162)) | ||
| * **flyte:** add config templates ([511f6cb](https://github.com/pinellolab/pyrovelocity/commit/511f6cb21aa18fc758516b5d5f943c7d3ec90aa6)) | ||
| * **gha:** add build-images workflow ([abb7266](https://github.com/pinellolab/pyrovelocity/commit/abb72663ccfeacf92db8891510dc0daa0597a2b2)) | ||
| * **make:** add ci targets ([8a7c250](https://github.com/pinellolab/pyrovelocity/commit/8a7c2501e587fe87cb1d499e56698dac1d83c388)) | ||
| * **make:** add nix targets ([8037ad1](https://github.com/pinellolab/pyrovelocity/commit/8037ad1adf7e0ac8d1cb96a1720b3a81a081e7fc)) | ||
| * **make:** add target to print tree ([4080c08](https://github.com/pinellolab/pyrovelocity/commit/4080c083dda4c381cb1b580225a63c922f1edda1)) | ||
| * **make:** add target to replace vars in config file ([4e9e1a9](https://github.com/pinellolab/pyrovelocity/commit/4e9e1a9c8d8c2e8de6264cccde5f33cf1a0fe9bd)) | ||
| * **make:** add targets to configure dev env ([10aa781](https://github.com/pinellolab/pyrovelocity/commit/10aa781d02128775e5211cb5b8beed37a14dfd3c)) | ||
| * **make:** add targets to set gh vars and secrets ([da50e44](https://github.com/pinellolab/pyrovelocity/commit/da50e44cf36f9b841eef0f92660b635c3f9dcf74)) | ||
| * **make:** add targets to setup dev env ([b69015d](https://github.com/pinellolab/pyrovelocity/commit/b69015dd157775a052928f2ebf1c24d121fc8445)) | ||
| * **make:** add update_version target ([4a352d3](https://github.com/pinellolab/pyrovelocity/commit/4a352d363be999fb85e3d33a2c559492de61b421)) | ||
| * **pyproject:** add jupyter server to docs group ([68eabde](https://github.com/pinellolab/pyrovelocity/commit/68eabdee58b197875a54f4091c040f24c446e5b0)) | ||
| * **scripts:** add script to activate nix flake ([2283f11](https://github.com/pinellolab/pyrovelocity/commit/2283f116bb8fbcb0400d31edd3fc22327f0f5356)) | ||
| * **scripts:** update flake to accept cmd arg ([01c2e94](https://github.com/pinellolab/pyrovelocity/commit/01c2e94a491bb1705c3f1a0be99685dd8fd3668f)) | ||
| * **vscode:** config debug launch for cli ([610fb8a](https://github.com/pinellolab/pyrovelocity/commit/610fb8ac3ea7b020ae53437c38cb64b1f46a3874)) | ||
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| ### Bug Fixes | ||
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| * **app:** restrict workflow to main ([5331fc5](https://github.com/pinellolab/pyrovelocity/commit/5331fc507ff7ad24b7b886729d7a4f2f02128b50)) | ||
| * **cid:** enable impure nix build ([936d150](https://github.com/pinellolab/pyrovelocity/commit/936d150f959f87de18f2dacc5b97e65c5f0c422a)) | ||
| * **cid:** ignore `conda/**` ([fdf0cb4](https://github.com/pinellolab/pyrovelocity/commit/fdf0cb41129b54c610f86543e9954671c110aa86)) | ||
| * **cid:** reenable docs build jobs ([efe61c2](https://github.com/pinellolab/pyrovelocity/commit/efe61c2a099563ab194a26a55c047667d1fde3a3)) | ||
| * **cid:** restrict build and release images to x86_64 ([6162007](https://github.com/pinellolab/pyrovelocity/commit/6162007c7340a0456a083944051112baaf7a56b9)) | ||
| * **cid:** set NUMBA_CACHE_DIR to runner.temp ([6d759a7](https://github.com/pinellolab/pyrovelocity/commit/6d759a752c3c167352e56f9754972c95a967cf6c)), closes [/github.com/numba/numba/issues/4032#issuecomment-488102702](https://github.com/pinellolab//github.com/numba/numba/issues/4032/issues/issuecomment-488102702) | ||
| * **cml-images:** reenable CML image workflow ([#485](https://github.com/pinellolab/pyrovelocity/issues/485)) ([815e616](https://github.com/pinellolab/pyrovelocity/commit/815e616053a02170a87d65657b06893be86fc785)) | ||
| * **colab:** reenable pytorch and nvidia channels ([53f60c4](https://github.com/pinellolab/pyrovelocity/commit/53f60c45e47b0fef28a18d9271ea321732103de0)) | ||
| * **conda:** sync virtual packages with colab ([75261d8](https://github.com/pinellolab/pyrovelocity/commit/75261d850fd7f47190bddadc7a4868140d05f9e6)) | ||
| * **containers:** git move from dockerfiles ([a56e5ad](https://github.com/pinellolab/pyrovelocity/commit/a56e5ad67a8b6b575734d5af09a4592af0d82705)) | ||
| * **direnv:** use flake ([2f4a3b7](https://github.com/pinellolab/pyrovelocity/commit/2f4a3b7eef115515ead6ced17a1699314cb6a04c)) | ||
| * **docs:** add CID and GH pages to status ([ca1dc54](https://github.com/pinellolab/pyrovelocity/commit/ca1dc541e61f85c565820414a26a783a5e767adb)) | ||
| * **docs:** add colab badge to template notebook ([7df9970](https://github.com/pinellolab/pyrovelocity/commit/7df9970e574fe39e1a6080476b6f0172d288f26d)) | ||
| * **docs:** clone branch or tag in colab template ([623048c](https://github.com/pinellolab/pyrovelocity/commit/623048c08f3a41c0cc0fc784e0dedea44672661d)) | ||
| * **envrc:** move direnv vars to .env ([4a1b343](https://github.com/pinellolab/pyrovelocity/commit/4a1b343c5b8a4f208f757818c1bd3fb015ce1520)) | ||
| * **flake:** add devPackages for rust term IDE ([3f21d7d](https://github.com/pinellolab/pyrovelocity/commit/3f21d7da31884d1d97da235918ecf001da087cc1)) | ||
| * **flake:** add nvitop to sysPackages for gpu mon ([b65ebbf](https://github.com/pinellolab/pyrovelocity/commit/b65ebbf071653e5e2f379373624493839faf42dd)) | ||
| * **flake:** disable checkPhase ([07123f1](https://github.com/pinellolab/pyrovelocity/commit/07123f1e1df11edbc1740746011e23cf2bfd6189)) | ||
| * **flake:** disable llvmlite wheel for all systems ([c9db64d](https://github.com/pinellolab/pyrovelocity/commit/c9db64d31769f4e3f02c4001bb829eeb8a0dd812)) | ||
| * **flake:** numba depends on tbb_2021_8 ([d0e326b](https://github.com/pinellolab/pyrovelocity/commit/d0e326b2fcf15aa24cefec0acb14f0f979f61f06)) | ||
| * **flake:** print value of `NUMBA_CACHE_DIR` ([70c9587](https://github.com/pinellolab/pyrovelocity/commit/70c958718957e849348307812795199c0a9d041f)) | ||
| * **flake:** set NUMBA_CACHE_DIR in default checkPhase ([d135d41](https://github.com/pinellolab/pyrovelocity/commit/d135d4105a8484c69b23d5fa07c9597df4e48bce)) | ||
| * **flake:** set ref beta ([a9c0728](https://github.com/pinellolab/pyrovelocity/commit/a9c0728aec5443bdcd90e992456b308dbc3b2ac0)) | ||
| * **flake:** switch poetry2nix patch ref ([3988172](https://github.com/pinellolab/pyrovelocity/commit/3988172bcf9ab7220fa00c164500637b4fb727f9)) | ||
| * **flake:** switch to stable poetry2nix patch branch ([820fa94](https://github.com/pinellolab/pyrovelocity/commit/820fa94d58ae0ec95462fcf54436c21f5114c592)) | ||
| * **gha:** add setup_environment action ([a1d4d30](https://github.com/pinellolab/pyrovelocity/commit/a1d4d3047f9b24f78935f2e933c5460e8a8638ba)) | ||
| * **gha:** disable independent actions ([f3ae9fb](https://github.com/pinellolab/pyrovelocity/commit/f3ae9fbaad86e812179b2837aeacca2dad4557cc)) | ||
| * **gha:** rename containers folder ([0e4ccd9](https://github.com/pinellolab/pyrovelocity/commit/0e4ccd96d9ab909362ab7801f958f08bb4cdb14c)) | ||
| * **gha:** rename deploy to app ([1540985](https://github.com/pinellolab/pyrovelocity/commit/15409857028bb9ca4f2b6e3a3fef675ee20433da)) | ||
| * **git:** rename master to main ([6743eeb](https://github.com/pinellolab/pyrovelocity/commit/6743eeb6d83d71107f89c1eb273583365a7042e5)) | ||
| * **labeler:** add workflow_dispatch ([74cf8bf](https://github.com/pinellolab/pyrovelocity/commit/74cf8bfebd71aafad4f2023c4e4c6d3199f33546)) | ||
| * **labels:** add PR workflow control labels ([b5649fd](https://github.com/pinellolab/pyrovelocity/commit/b5649fd6a7504ec97c7adacaa8bdaf2365e7a092)) | ||
| * **make:** add git ref/rev vars ([1f70ea0](https://github.com/pinellolab/pyrovelocity/commit/1f70ea0d4f2a735a1f2e95dff9690ef84c3542c3)) | ||
| * **make:** add package dev targets ([0d31924](https://github.com/pinellolab/pyrovelocity/commit/0d319245ca198af543f671d2980e64d5efdc0a1d)) | ||
| * **make:** disable setting CODECOV_TOKEN ([d366338](https://github.com/pinellolab/pyrovelocity/commit/d366338fc41d849dbc39625925172855bd8b57b1)) | ||
| * **make:** universally accept flake config ([f8540f3](https://github.com/pinellolab/pyrovelocity/commit/f8540f3568b935d3e0502a467e2a9b7cc26ddf7f)) | ||
| * **make:** update docs targets ([dccf668](https://github.com/pinellolab/pyrovelocity/commit/dccf668de5e29f8f7581ce82c5aa1d02e6e651e6)) | ||
| * **mergify:** queue method fast-forward ([f13bb43](https://github.com/pinellolab/pyrovelocity/commit/f13bb43ac4f6b70e1fbb3f267b992077f0deeeb1)) | ||
| * **mergify:** update `check-success` names ([e07cefd](https://github.com/pinellolab/pyrovelocity/commit/e07cefd088b3d171ea9967973f88c153323278d8)) | ||
| * **meta:** add pyrovelocity-reviewers to codeowners ([b5c1a77](https://github.com/pinellolab/pyrovelocity/commit/b5c1a77711c32e6880da2473554e697fa63c21f6)) | ||
| * **pre-commit:** lint ([5cddc71](https://github.com/pinellolab/pyrovelocity/commit/5cddc71ba4186e0a2dc2bde7a1cea043b08365cd)) | ||
| * **pre-commit:** sync config with pyproject.toml ([becd02e](https://github.com/pinellolab/pyrovelocity/commit/becd02ef5896e7111329694f8b96a7af629a2329)) | ||
| * **pyproject:** enable pytorch and nvidia channels for conda-lock export ([0f9cdec](https://github.com/pinellolab/pyrovelocity/commit/0f9cdecba5095b7da7a40c0085936d0e53bfa27c)) | ||
| * **pyproject:** move to src ([4e222fc](https://github.com/pinellolab/pyrovelocity/commit/4e222fcd72b8de652c54386bba4a1484736536ef)) | ||
| * **pyproject:** pin `lxml<5.0.0` ([134cede](https://github.com/pinellolab/pyrovelocity/commit/134cede0a169d5345d6ea18601c8d0170a305a10)) | ||
| * **pyproject:** remove pipeline components ([3c08f46](https://github.com/pinellolab/pyrovelocity/commit/3c08f4674696a253d630e8c426ad7a6cd5061b59)) | ||
| * **pyproject:** update conda-lock deps ([4fa975a](https://github.com/pinellolab/pyrovelocity/commit/4fa975ae6463d11b0cf75611c30fb79e5e174e3d)) | ||
| * **pyproject:** update docs dependencies ([77fe0e3](https://github.com/pinellolab/pyrovelocity/commit/77fe0e3275838e5b65a8315febf9d515c20599cd)) | ||
| * **pyproject:** update tool configs ([34621ec](https://github.com/pinellolab/pyrovelocity/commit/34621ec126f71059b987c26d9396f84532852025)) | ||
| * **pyrovelocity:** move to src ([5f70c46](https://github.com/pinellolab/pyrovelocity/commit/5f70c46530e2b00215e6cae1b4b7a79e0303ae04)) | ||
| * **setup_environment:** add pandoc ([2901217](https://github.com/pinellolab/pyrovelocity/commit/2901217360ab53c3abc1b421ad17ae841c6914b6)) | ||
| * **vscode:** update font sizes ([4ea8f6e](https://github.com/pinellolab/pyrovelocity/commit/4ea8f6eb8d60a88f974969f07a140e018d36503d)) | ||
| * **vscode:** update settings for devcontainer ([3113bef](https://github.com/pinellolab/pyrovelocity/commit/3113bef4a40666a5c1b125f9a1f02b91ce7c6310)) |
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