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Releases: qbic-pipelines/vcftomat

1.0.0 - Curie Purpureal

16 Dec 14:45
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This is the initial release of a pipeline that can take (g)VCF files and converts them a table format useful for statistical analysis.

  1. Indexes (g.)vcf files (tabix)
  2. Converts g.vcf files to vcf with genotypegvcf (GATK)
  3. Merges all vcfs from the same sample with bcftools/merge (bcftools)
  4. Converts the (merged) vcfs to a matrix using a custom R script written by @ellisdoro (R)
  5. Collects all reports into a MultiQC report (MultiQC)