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QIITA_SERVER_CERT
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antgonza committed Feb 6, 2024
1 parent b1844ac commit dd972bc
Showing 1 changed file with 4 additions and 3 deletions.
7 changes: 4 additions & 3 deletions .github/workflows/qiita-plugin-ci.yml
Original file line number Diff line number Diff line change
Expand Up @@ -84,8 +84,9 @@ jobs:
conda create -q --yes -n qp-meta python=3.9 biom-format sortmerna=2.1b samtools pigz
conda activate qp-meta
export QIITA_SERVER_CERT=`pwd`/qiita-dev/qiita_core/support_files/server.crt
export QIITA_SERVER_CERT=`pwd`/qiita-dev/qiita_core/support_files/ci_rootca.crt
export QIITA_CONFIG_FP=`pwd`/qiita-dev/qiita_core/support_files/config_test_local.cfg
pip --quiet install -U pip
pip --quiet install .
pip --quiet install coveralls
Expand All @@ -105,7 +106,7 @@ jobs:
shell: bash -l {0}
run: |
conda activate qiita
export QIITA_SERVER_CERT=`pwd`/qiita-dev/qiita_core/support_files/server.crt
export QIITA_SERVER_CERT=`pwd`/qiita-dev/qiita_core/support_files/ci_rootca.crt
export QIITA_CONFIG_FP=`pwd`/qiita-dev/qiita_core/support_files/config_test_local.cfg
sed "s#/home/runner/work/qiita/qiita#${PWD}/qiita-dev/#g" `pwd`/qiita-dev/qiita_core/support_files/config_test.cfg > ${QIITA_CONFIG_FP}
Expand Down Expand Up @@ -138,7 +139,7 @@ jobs:
run: |
conda activate qp-meta
export QIITA_SERVER_CERT=`pwd`/qiita-dev/qiita_core/support_files/server.crt
export QIITA_SERVER_CERT=`pwd`/qiita-dev/qiita_core/support_files/ci_rootca.crt
export QIITA_CONFIG_FP=`pwd`/qiita-dev/qiita_core/support_files/config_test_local.cfg
export QC_SORTMERNA_DB_DP=$PWD/qp_meta/sortmerna/databases/rRNA_databases/
export ENVIRONMENT="source /home/runner/.profile; conda activate qp-meta"
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