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fu rename

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Andrea Telatin edited this page Jul 27, 2020 · 1 revision

fu-rename

⚠️ This program's APIs are not finalized

A program to rename FASTA / FASTQ sequences, compressed or not

	Usage:
	fu-rename [options] InputFile.fa [...]

	-p, --prefix STRING
		New sequence name (accept placehodlers),
		default is "{b}"

	-s, --separator STRING
		Separator between prefix and sequence
		number

	-r, --reset
		Reset counter at each file

	example:
	fu-rename -p '{b}' test.fa test2.fa > renamed.fa

	Placeholders:
	{b} = File basename without extensions
	{B} = File basename with extension

🧬 SeqFU - a collection of tools to parse and manipulate FASTA and FASTQ files, supporting compressed input

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