Updated package to be compatible with newer versions of dataframes

Manifest.toml

@@ -1,6 +1,8 @@
 # This file is machine-generated - editing it directly is not advised
 
+julia_version = "1.9.1"
 manifest_format = "2.0"
+project_hash = "eb8d02a8ecaea7b2d8d11a967ccc66eabc3c237d"
 
 [[deps.ArgTools]]
 uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
@@ -46,6 +48,22 @@ git-tree-sha1 = "18d7f3e82c1a80dd38c16453b8fd3f0a7db92f23"
 uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597"
 version = "0.9.7"
 
+[[deps.ChainRulesCore]]
+deps = ["Compat", "LinearAlgebra", "SparseArrays"]
+git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644"
+uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
+version = "1.16.0"
+
+[[deps.ChangesOfVariables]]
+deps = ["LinearAlgebra", "Test"]
+git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f"
+uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0"
+version = "0.1.8"
+weakdeps = ["InverseFunctions"]
+
+    [deps.ChangesOfVariables.extensions]
+    ChangesOfVariablesInverseFunctionsExt = "InverseFunctions"
+
 [[deps.CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
 git-tree-sha1 = "9c209fb7536406834aa938fb149964b985de6c83"
@@ -118,6 +136,12 @@ git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae"
 uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"
 version = "1.9.1"
 
+[[deps.DensityInterface]]
+deps = ["InverseFunctions", "Test"]
+git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b"
+uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d"
+version = "0.4.0"
+
 [[deps.Distributed]]
 deps = ["Random", "Serialization", "Sockets"]
 uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
@@ -127,15 +151,12 @@ deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "
 git-tree-sha1 = "c72970914c8a21b36bbc244e9df0ed1834a0360b"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
 version = "0.25.95"
+weakdeps = ["ChainRulesCore", "DensityInterface"]
 
     [deps.Distributions.extensions]
     DistributionsChainRulesCoreExt = "ChainRulesCore"
     DistributionsDensityInterfaceExt = "DensityInterface"
 
-    [deps.Distributions.weakdeps]
-    ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-    DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d"
-
 [[deps.DocStringExtensions]]
 deps = ["LibGit2"]
 git-tree-sha1 = "b19534d1895d702889b219c382a6e18010797f0b"
@@ -230,6 +251,12 @@ version = "1.4.0"
 deps = ["Markdown"]
 uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 
+[[deps.InverseFunctions]]
+deps = ["Test"]
+git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46"
+uuid = "3587e190-3f89-42d0-90ee-14403ec27112"
+version = "0.1.12"
+
 [[deps.InvertedIndices]]
 git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038"
 uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f"
@@ -288,17 +315,13 @@ deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]
 git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f"
 uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
 version = "0.3.24"
+weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"]
 
     [deps.LogExpFunctions.extensions]
     LogExpFunctionsChainRulesCoreExt = "ChainRulesCore"
     LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables"
     LogExpFunctionsInverseFunctionsExt = "InverseFunctions"
 
-    [deps.LogExpFunctions.weakdeps]
-    ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-    ChangesOfVariables = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0"
-    InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112"
-
 [[deps.Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
@@ -517,13 +540,11 @@ deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_j
 git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880"
 uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
 version = "2.2.0"
+weakdeps = ["ChainRulesCore"]
 
     [deps.SpecialFunctions.extensions]
     SpecialFunctionsChainRulesCoreExt = "ChainRulesCore"
 
-    [deps.SpecialFunctions.weakdeps]
-    ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-
 [[deps.Statistics]]
 deps = ["LinearAlgebra", "SparseArrays"]
 uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
@@ -546,15 +567,12 @@ deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Re
 git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a"
 uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
 version = "1.3.0"
+weakdeps = ["ChainRulesCore", "InverseFunctions"]
 
     [deps.StatsFuns.extensions]
     StatsFunsChainRulesCoreExt = "ChainRulesCore"
     StatsFunsInverseFunctionsExt = "InverseFunctions"
 
-    [deps.StatsFuns.weakdeps]
-    ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-    InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112"
-
 [[deps.StructTypes]]
 deps = ["Dates", "UUIDs"]
 git-tree-sha1 = "ca4bccb03acf9faaf4137a9abc1881ed1841aa70"

src/output.jl

@@ -427,10 +427,23 @@ JudiLing.write2df(ts)
 function write2df(ts::Threshold_Stat_Struct)
     n = ts.timestep
 
-    df = DataFrame(vcat([Int64, Float64, Float64], [Float64 for k in 1:2n]),
-        vcat([:utterance, :threshold, :tolerance], [Symbol("thr_prop_$k") for k in 1:n], [Symbol("tlr_prop_$k") for k in 1:n]),
-        0)
 
+
+    # df = DataFrame(vcat([Int64, Float64, Float64], [Float64 for k in 1:2n]),
+    #     vcat([:utterance, :threshold, :tolerance], [Symbol("thr_prop_$k") for k in 1:n], [Symbol("tlr_prop_$k") for k in 1:n]),
+    #     0)
+
+    # utterance = Vector{Int64}()
+    # threshold = Vector{Float64}()
+    # tolerance = Vector{Float64}()
+    # threshold_prop = Matrix{Float64}(undef, 0, 2n)
+    thr_prop_dict = Dict(Symbol("thr_prop_$k") => Vector{Float64}() for k in 1:n)
+    tlr_prop_dict = Dict(Symbol("tlr_prop_$k") => Vector{Float64}() for k in 1:n)
+    df = DataFrame(merge(Dict(:utterance => Vector{Int64}(),
+                    :threshold => Vector{Float64}(),
+                    :tolerance => Vector{Float64}()),
+                    thr_prop_dict, tlr_prop_dict)
+                    )
     for i in 1:ts.n_rows
         push!(df, vcat([i, ts.threshold, ts.tolerance], ts.threshold_prop[i,:], ts.tolerance_prop[i,:]))
     end
@@ -454,7 +467,7 @@ JudiLing.save_L_matrix(L, joinpath(@__DIR__, "L.csv"))
 """
 function save_L_matrix(L, filename)
 
-    L_df = DataFrame(L.L)
+    L_df = DataFrame(L.L, :auto)
     insertcols!(L_df, 1, :col_names => L.i2f)
     CSV.write(filename, L_df, quotestrings = true, header = false)
     nothing
@@ -508,7 +521,7 @@ JudiLing.save_S_matrix(S, joinpath(@__DIR__, "S.csv"), latin, :Word)
 """
 function save_S_matrix(S, filename, data, target_col; sep = " ")
 
-    S_df = DataFrame(S)
+    S_df = DataFrame(S, :auto)
     insertcols!(S_df, 1, :col_names => data[:,target_col])
     CSV.write(filename, S_df, quotestrings = true, header = false, delim=sep)
     nothing