Skip to content

Issues: r3fang/SnapATAC

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

146 Open 109 Closed
146 Open 109 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Using only .snap file from publication for SnapATAC analysis
#260 opened Jan 31, 2024 by Jasminefighter
createGmatFromMat ERROR
#258 opened Jan 12, 2024 by gengbaobao
2
'CEMBA180305_2B.snap' no snap object in "Integrative Analysis of 10X and snATAC"
#257 opened Jan 2, 2024 by aminbensaad
snapRbind uses defunct function rBind
#255 opened Apr 27, 2023 by imran-aifi
Troubles with homer findknownmotifs.pl
#254 opened Feb 16, 2023 by sanjanabhatnagar
Troubles while creating snap file with bam
#253 opened Nov 19, 2022 by HieuNg1598
Can we determ the chromatin accessibility for one single cell?
#252 opened Oct 27, 2022 by biozzq
Merging multiple fragment samples
#251 opened Sep 18, 2022 by seoyeonoh12
Transitioning from v1 to v2 SnapATAC
#249 opened Jul 29, 2022 by mej54
snaptools for plant genome
#248 opened Jun 19, 2022 by 304243504
failed to read alignments from BAM
#247 opened Jun 2, 2022 by kunalkathuria
2
converting signac object to snap atac
#246 opened May 8, 2022 by hamidsta
General package installation/download difficulty - especially interopability with seurat
#245 opened Apr 21, 2022 by BradleyH017
[Error: Cholmod error 'problem too large']: when integrating multiple matrix using snapRbind function
#244 opened Mar 16, 2022 by murphchuyi
1
GM and PM not found by snapAtac
#243 opened Mar 8, 2022 by rLannes
1
Error in calGmatFromMat()
#242 opened Jan 29, 2022 by swttalyan
gencode.vM16.gene.bed download
#241 opened Jan 10, 2022 by linhch5
error In runKNN（）
#240 opened Dec 9, 2021 by 1221li
Installation issues
#238 opened Nov 20, 2021 by darlene003
4
runEigDecomp function results in NaN
#237 opened Oct 22, 2021 by marvinquiet
The documents in http://renlab.sdsc.edu/r3fang/share/Fang_2019/MOs_snATAC can't be downloaded. The links aren't accessible
#235 opened Aug 20, 2021 by ifyouaresober
2
Error" 'rBind' is defunct.
#234 opened Jul 13, 2021 by AndresLugoCas
5
Update the Snapatac
#233 opened Jul 10, 2021 by tzhu-bio
i cannot import phenograph because of this
#232 opened Jul 4, 2021 by vinu2004
Analyzing multiple samples with separate barcode information
#231 opened Jun 7, 2021 by Xinyi371
ProTip! Type g i on any issue or pull request to go back to the issue listing page.