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evaluation module #130

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merged 45 commits into from
Apr 1, 2024
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fd6bbff
first draft
remrama Dec 31, 2022
af22cc0
plot_hypnogramS method
remrama Dec 31, 2022
cfa1f6b
docstrings examples
remrama Dec 31, 2022
f036da3
plot_hypnogram lw --> linekwargs
remrama Dec 31, 2022
16fc5bd
heatmap colorbar label
remrama Dec 31, 2022
c042553
pass kwargs through to all pingouin calls
remrama Dec 31, 2022
70f3627
docstrings examples update
remrama Dec 31, 2022
cfaf8b6
setting attrs, docstrings, var name changes
remrama Jan 2, 2023
e490cc9
SleepStatsEval takes 2 dataframes as input, reshaping is done internally
remrama Jan 2, 2023
a8a3b1c
EpochByEpoch accepts sequences of Hypnograms for group evaluation
remrama Jan 2, 2023
a9b784a
EpochByEpoch gets sleep stats
remrama Jan 2, 2023
b4df021
SleepStats move statistical tests to __init__()
remrama Jan 2, 2023
ba06ab1
better plotting flexibility and baked-in sleepstats_order
remrama Jan 3, 2023
1eb95ce
major restructure of attributes/methods and scores calculations
remrama Jan 4, 2023
48f1df6
cleanup
remrama Jan 4, 2023
120b097
alternate ovr agreement implementation
remrama Jan 4, 2023
1fcd184
use hyp integers instead of strings for big skm agreement speed impro…
remrama Jan 4, 2023
b3a6424
fmt
remrama Jan 4, 2023
2cdd817
quick comment addresses
remrama Jan 4, 2023
678c8c9
mad
remrama Jan 4, 2023
5ce1776
typo
remrama Jan 4, 2023
3c83eda
pd.crosstab --> skm.confusion_matrix
remrama Jan 8, 2023
0923bf7
3 group-hypnogram plotting options, need feedback
remrama Jan 8, 2023
8f17ec9
minor
remrama Jan 8, 2023
54958be
normality bug
remrama Jan 8, 2023
b1c0d9a
black fmt makes my pandas chains lonnggggg
remrama Jan 8, 2023
fa7eac6
diff_data --> discrepancies
remrama Jan 8, 2023
aeacf89
trailing not leading _kwargs
remrama Jan 9, 2023
dfd7005
major EpochByEpoch restructure
remrama Dec 18, 2023
349bfe7
class methods alphabetical order
remrama Dec 18, 2023
e0ff2fe
SleepStatsAgreement major restructure
remrama Feb 11, 2024
44869c2
first draft
remrama Dec 31, 2022
dea7050
plot_hypnogramS method
remrama Dec 31, 2022
b47385b
major restructure of attributes/methods and scores calculations
remrama Jan 4, 2023
28f268b
alternate ovr agreement implementation
remrama Jan 4, 2023
510b4a6
3 group-hypnogram plotting options, need feedback
remrama Jan 8, 2023
7d3fd15
major EpochByEpoch restructure
remrama Dec 18, 2023
b643d92
SleepStatsAgreement major restructure
remrama Feb 11, 2024
3316763
Merge branch 'evaluation' of https://github.com/remrama/yasa into eva…
remrama Feb 11, 2024
8e575bd
formatting
remrama Feb 12, 2024
8dbfff2
remove pingouin requirement
remrama Feb 26, 2024
0447edc
addressed minor PR review comments
remrama Feb 26, 2024
ada6ab0
formatting
remrama Feb 26, 2024
f3ed7aa
black formatting
remrama Mar 4, 2024
b2e3624
Merge branch 'master' into evaluation
remrama Mar 4, 2024
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1 change: 1 addition & 0 deletions requirements.txt
Original file line number Diff line number Diff line change
Expand Up @@ -15,3 +15,4 @@ sleepecg>=0.5.0
joblib
antropy
lightgbm
pingouin>=0.5.3
1 change: 1 addition & 0 deletions yasa/__init__.py
Original file line number Diff line number Diff line change
@@ -1,5 +1,6 @@
import logging
from .detection import *
from .evaluation import *
from .features import *
from .heart import *
from .hypno import *
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