Add relevant JavaDoc documentation

src/main/java/reposense/model/ConfigRunConfiguration.java

@@ -2,11 +2,9 @@
 
 import java.io.IOException;
 import java.nio.file.Files;
-import java.nio.file.Path;
 import java.util.Arrays;
 import java.util.Collections;
 import java.util.List;
-import java.util.function.Supplier;
 import java.util.logging.Level;
 import java.util.logging.Logger;
 

src/main/java/reposense/util/function/FailableOptional.java

@@ -6,16 +6,48 @@
 import java.util.function.Supplier;
 
 /**
- * {@code Optional<T>} monad that enables both an empty and a
- * fail option.
+ * An {@code Optional<T>} monad that enables both an empty and a fail option.
  *
- * @param <T> Type T, unbounded to any type.
+ * @param <T> Generic Type {@code T}, unbounded to any type.
  */
 public abstract class FailableOptional<T> {
+    /**
+     * Creates a new {@code FailableOptional<T>} object. {@code FailableOptional<T>}
+     * can contain {@code null}.
+     *
+     * @param item Item of type {@code T}.
+     * @param <T> Generic Type {@code T}.
+     * @return An instance of {@code FailableOptional<T>} instance.
+     */
+    public static <T> FailableOptional<T> of(T item) {
+        return new Present<>(item);
+    }
+
+    /**
+     * Creates a new {@code FailableOptional<T>} object.
+     * This method can allow null values to be stored within the {@code FailableOptional<T>} object.
+     *
+     * @param supplier Produces an object of type {@code T}, which can also be {@code null}.
+     *                 This {@code Supplier} cannot throw any Exceptions.
+     * @param <T> Generic type {@code T}.
+     * @return {@code FailableOptional<T>} object wrapping an object of type {@code T}.
+     */
     public static <T> FailableOptional<T> of(Supplier<T> supplier) {
         return of(supplier.get());
     }
 
+    /**
+     * Creates a new {@code FailableOptional<T>} object.
+     * This method can allow null values to be stored within the {@code FailableOptional<T>} object.
+     *
+     * @param supplier Produces an object of type {@code T}, which can also be {@code null}.
+     *                 This {@code ThrowableSupplier} can throw Exceptions and will be automatically
+     *                 converted into a failed instance of {@code ThrowaableSupplier}.
+     * @param <T> Generic type {@code T}.
+     * @param <E> Generic type {@code E} bounded to {@code Exception}.
+     * @return {@code FailableOptional<T>} object wrapping an object of type {@code T} or a failed
+     *     instance of {@code FailableOptional<T>}.
+     */
     public static <T, E extends Exception> FailableOptional<T> of(ThrowableSupplier<T, E> supplier) {
         try {
             return of(supplier.produce());
@@ -24,10 +56,44 @@ public static <T, E extends Exception> FailableOptional<T> of(ThrowableSupplier<
         }
     }
 
+    /**
+     * Creates a new {@code FailableOptional<T>} object.
+     * {@code null} is automatically converted into an empty instance of {@code FailableOptional<T>} object.
+     *
+     * @param item Item of type {@code T}.
+     * @param <T> Generic Type {@code T}.
+     * @return An instance of {@code FailableOptional<T>} instance.
+     */
+    public static <T> FailableOptional<T> ofNullable(T item) {
+        return item == null ? ofAbsent() : of(item);
+    }
+
+    /**
+     * Creates a new {@code FailableOptional<T>} object.
+     * This method converts {@code null} into an empty instance of {@code FailableOptional<T>}.
+     *
+     * @param supplier Produces an object of type {@code T}, which can also be {@code null}.
+     *                 This {@code Supplier} cannot throw any Exceptions.
+     * @param <T> Generic type {@code T}.
+     * @return {@code FailableOptional<T>} object wrapping an object of type {@code T} or an empty
+     *     instance of {@code FailableOptional<T>}.
+     */
     public static <T> FailableOptional<T> ofNullable(Supplier<T> supplier) {
         return ofNullable(supplier.get());
     }
 
+    /**
+     * Creates a new {@code FailableOptional<T>} object.
+     * This method converts {@code null} into an empty instance of {@code FailableOptional<T>}.
+     *
+     * @param supplier Produces an object of type {@code T}, which can also be {@code null}.
+     *                 This {@code ThrowableSupplier} can throw Exceptions and will be automatically
+     *                 converted into a failed instance of {@code ThrowaableSupplier}.
+     * @param <T> Generic type {@code T}.
+     * @param <E> Generic type {@code E} bounded to {@code Exception}.
+     * @return {@code FailableOptional<T>} object wrapping an object of type {@code T} or an empty
+     *     instance of {@code FailableOptional<T>}.
+     */
     public static <T, E extends Exception> FailableOptional<T> ofNullable(ThrowableSupplier<T, E> supplier) {
         try {
             return ofNullable(supplier.produce());
@@ -36,45 +102,210 @@ public static <T, E extends Exception> FailableOptional<T> ofNullable(ThrowableS
         }
     }
 
-    public static <T> FailableOptional<T> of(T item) {
-        return new Present<>(item);
-    }
-
-    public static <T> FailableOptional<T> ofNullable(T item) {
-        return item == null ? ofAbsent() : of(item);
-    }
-
+    /**
+     * Creates an empty instance of {@code FailableOptional<T>}.
+     *
+     * @param <T> Generic Type {@code T}.
+     * @return Empty instance of {@code FailableOptional<T>}.
+     */
     public static <T> FailableOptional<T> ofAbsent() {
         return new Absent<>();
     }
 
+    /**
+     * Creates a failed instance of {@code FailableOptional<T>}.
+     *
+     * @param <T> Generic Type {@code T}.
+     * @return Failed instance of {@code FailableOptional<T>}.
+     */
     public static <T> FailableOptional<T> ofFailure(Exception e) {
         return new Fail<>(e);
     }
 
+    /**
+     * Executes the provided {@code Runner} if this current instance of
+     * {@code FailableOptional<T>} contains a value.
+     *
+     * @param runner {@code Runner} instance that executes if this {@code FailableOptional<T>}
+     *                             contains a value
+     * @return This {@code FailableOptional<T>} object
+     */
     public abstract FailableOptional<T> ifPresent(Runnable runner);
+
+    /**
+     * Executes the provided {@code ThrowableConsumer<T, E>} if this current instance of
+     * {@code FailableOptional<T>} contains a value.
+     *
+     * @param consumer {@code ThrowableConsumer<T, E>} instance that consumes the stored
+     *                                                value if present.
+     * @param <E> Generic Type {@code E} bounded by Exception.
+     * @return This {@code ThrowableConsumer<T, E>} instance.
+     */
     public abstract <E extends Exception> FailableOptional<T> ifPresent(ThrowableConsumer<T, E> consumer);
+
+    /**
+     * Executes the provided {@code Runner} if this current instance of
+     * {@code FailableOptional<T>} does not contains a value.
+     *
+     * @param runner {@code Runner} instance that executes if this {@code FailableOptional<T>}
+     *                             does not contains a value.
+     * @return This {@code FailableOptional<T>} object.
+     */
     public abstract FailableOptional<T> ifAbsent(Runnable runner);
+
+    /**
+     * Executes the provided {@code ThrowableConsumer<T, E>} if this current instance of
+     * {@code FailableOptional<T>} does not contains a value.
+     *
+     * @param consumer {@code ThrowableConsumer<T, E>} instance that attempts to consume
+     *                                                an object of type {@code T}.
+     * @param <E> Generic Type {@code E} bounded by Exception.
+     * @return This {@code ThrowableConsumer<T, E>} instance.
+     */
     public abstract <E extends Exception> FailableOptional<T> ifAbsent(ThrowableConsumer<T, E> consumer);
+
+    /**
+     * Executes the provided {@code Runner} if this current instance of
+     * {@code FailableOptional<T>} has failed.
+     *
+     * @param runner {@code Runner} instance that executes if this {@code FailableOptional<T>}
+     *                             has failed.
+     * @return This {@code FailableOptional<T>} object.
+     */
     public abstract FailableOptional<T> ifFail(Runnable runner);
+
+    /**
+     * Executes the provided {@code ThrowableConsumer<T, E>} if this current instance of
+     * {@code FailableOptional<T>} has failed.
+     *
+     * @param consumer {@code ThrowableConsumer<T, E>} instance that attempts to consume
+     *                                                an object of type {@code T}.
+     * @param <E> Generic Type {@code E} bounded by Exception.
+     * @return This {@code ThrowableConsumer<T, E>} instance.
+     */
     public abstract <E extends Exception, F extends Exception> FailableOptional<T> ifFail(
             ThrowableConsumer<? super E, ? extends F> consumer);
 
+    /**
+     * Maps the stored value in this {@code FailableOptional<T>} into another
+     * {@code FailableOptional<U>} containing items of Type {@code U}.
+     * If this {@code FailableOptional<T>} contains nothing or has failed,
+     * this instance is returned as is.
+     *
+     * @param function {@code ThrowableFunction<T, U, E>} that takes an object of Type {@code T}
+     *                                                   and returns Type {@code U} and might throw
+     *                                                   Exception of Type {@code E}.
+     * @param <U> Generic Type {@code U}, representing the return type of the new {@code FailableOptional<U>}.
+     * @param <E> Generic Type {@code E}, representing the Type of the Exception that might be thrown.
+     * @return This instance, if this instance is empty or has failed, otherwise, a new mapped instance
+     *     of {@code FailableOptional<U>}.
+     */
     public abstract <U, E extends Exception> FailableOptional<U> map(ThrowableFunction<? super T,
             ? extends U, E> function);
+
+    /**
+     * Maps the stored value into another new instance of {@code FailableOptional<U>}. Unlike {@code map},
+     * this method requires that functions itself return the new instance of {@code FailableOptional<U>}.
+     *
+     * @param function {@code ThrowableFunction<T, U, E>} that takes an object of Type {@code T}
+     *                                                    and returns Type {@code FailableOptional<U>} and
+     *                                                    might throw Exception of Type {@code E}.
+     * @param <U> Generic Type {@code U}, representing the return type of the new {@code FailableOptional<U>}.
+     * @param <E> Generic Type {@code E}, representing the Type of the Exception that might be thrown.
+     * @return This instance, if this instance is empty or has failed, otherwise, a new mapped instance
+     *      of {@code FailableOptional<U>}.
+     */
     public abstract <U, E extends Exception> FailableOptional<U> flatMap(
             ThrowableFunction<? super T, ? extends FailableOptional<U>, E> function);
+
+    /**
+     * Checks if the stored item fulfills the predicate, and if so, return this instance, and if not,
+     * return an empty instance of {@code FailableOptional<T>}.
+     *
+     * @param predicate {@code Predicate} that tests an item of Type {@code T}.
+     * @return This instance if the predicate evaluates to true, else an empty instance of
+     *     {@code FailableOptional<T>}.
+     */
     public abstract FailableOptional<T> filter(Predicate<T> predicate);
+
+    /**
+     * Returns the item stored in this {@code FailableOptional<T>}.
+     *
+     * @return Stored item of Type {@code T}
+     * @throws NoSuchElementException if this {@code FailableOptional<T>} does not contain any values
+     *     or has failed.
+     */
     public abstract T get() throws NoSuchElementException;
+
+    /**
+     * Returns the item stored in this {@code FailableOptional<T>}, and if
+     * there is no such value, return the input parameter {@code item}.
+     *
+     * @param item The value to return if this {@code FailableOptional<T>} is empty or has failed.
+     * @return The stored item or the input item.
+     */
     public abstract T orElse(T item);
+
+    /**
+     * Returns the item stored in this {@code FailableOptional<T>}, and if
+     * there is no such value, return the input parameter {@code item}.
+     *
+     * @param e The Exception to throw if this {@code FailableOptional<T>} is empty or has failed.
+     * @return The stored item or throws an Exception.
+     * @throws Exception if there are no items stored in this {@code FailableOptional<T>} instance.
+     */
     public abstract T orElseThrow(Exception e) throws Exception;
+
+    /**
+     * Checks if this {@code FailableOptional<T>} instance contains a value.
+     *
+     * @return true if this instance of {@code FailableOptional<T>} is not empty, false otherwise.
+     */
     public abstract boolean isPresent();
+
+    /**
+     * Checks if this {@code FailableOptional<T>} instance does not contains a value.
+     *
+     * @return true if this instance of {@code FailableOptional<T>} is empty, false otherwise.
+     */
     public abstract boolean isAbsent();
+
+    /**
+     * Checks if this {@code FailableOptional<T>} instance has failed.
+     *
+     * @return true if this instance of {@code FailableOptional<T>} has failed, false otherwise.
+     */
     public abstract boolean isFail();
+
+    /**
+     * Verifies that a failed instance of {@code FailableOptional<T>} has failed due to the
+     * input list of Exceptions to check.
+     *
+     * @param exList List of Exception Classes to verify the failure Exception cause.
+     * @return This instance if this instance has failed and is due to any one of the reasons specified
+     *     in the {@code exList} argument, or an empty {@code FailableOptional<T>} instance otherwise.
+     */
     public abstract FailableOptional<T> ifFailOfType(List<Class<? extends Exception>> exList);
+
+    /**
+     * Attempts to recover a failed instance by providing an item of Type {@code U}, which will be
+     * wrapped up in another {@code FailableOptional<U>} object.
+     *
+     * @param supplier A {@code ThrowableSupplier<U, E>} instance that provides an item of Type {@code U},
+     *                 which may throw an Exception of Type {@code E}.
+     * @param <U> Generic Type {@code U} represents the Type of the object returned by the
+     *           {@code ThrowableSupplier<U, E>}.
+     * @param <E> Generic Type {@code E} bounded by Exception.
+     * @return A new {@code FailableOptional<U>} object.
+     */
     public abstract <U, E extends Exception> FailableOptional<U> recover(ThrowableSupplier<U, E> supplier);
 
-    private static class Present<T> extends FailableOptional<T> {
+    /**
+     * Represents a {@code ThrowableSupplier} that contains a value.
+     *
+     * @param <T> Generic Type {@code T}.
+     */
+    private static final class Present<T> extends FailableOptional<T> {
         private final T item;
 
         private Present(T item) {
@@ -128,7 +359,8 @@ public <U, E extends Exception> FailableOptional<U> map(ThrowableFunction<? supe
         }
 
         @Override
-        public <U, E extends Exception> FailableOptional<U> flatMap(ThrowableFunction<? super T, ? extends FailableOptional<U>, E> function) {
+        public <U, E extends Exception> FailableOptional<U> flatMap(
+                ThrowableFunction<? super T, ? extends FailableOptional<U>, E> function) {
             try {
                 return function.apply(this.item);
             } catch (Exception e) {
@@ -186,7 +418,12 @@ public <U, E extends Exception> FailableOptional<U> recover(ThrowableSupplier<U,
         }
     }
 
-    private static class Absent<T> extends FailableOptional<T> {
+    /**
+     * Represents a {@code ThrowableSupplier} that does not contain any value.
+     *
+     * @param <T> Generic Type {@code T}.
+     */
+    private static final class Absent<T> extends FailableOptional<T> {
 
         @Override
         public FailableOptional<T> ifPresent(Runnable runner) {
@@ -227,7 +464,8 @@ public <U, E extends Exception> FailableOptional<U> map(ThrowableFunction<? supe
         }
 
         @Override
-        public <U, E extends Exception> FailableOptional<U> flatMap(ThrowableFunction<? super T, ? extends FailableOptional<U>, E> function) {
+        public <U, E extends Exception> FailableOptional<U> flatMap(
+                ThrowableFunction<? super T, ? extends FailableOptional<U>, E> function) {
             @SuppressWarnings("unchecked")
             FailableOptional<U> failed = (FailableOptional<U>) this;
             return failed;
@@ -279,6 +517,11 @@ public <U, E extends Exception> FailableOptional<U> recover(ThrowableSupplier<U,
         }
     }
 
+    /**
+     * Represents a {@code ThrowableSupplier} that has failed.
+     *
+     * @param <T> Generic Type {@code T}.
+     */
     private static class Fail<T> extends FailableOptional<T> {
         private final Exception exception;
 
@@ -312,7 +555,9 @@ public FailableOptional<T> ifFail(Runnable runner) {
             return this;
         }
 
-        public <E extends Exception, F extends Exception> FailableOptional<T> ifFail(ThrowableConsumer<? super E, ? extends F> consumer) {
+        @Override
+        public <E extends Exception, F extends Exception> FailableOptional<T> ifFail(
+                ThrowableConsumer<? super E, ? extends F> consumer) {
             try {
                 @SuppressWarnings("unchecked")
                 E except = (E) this.exception;
@@ -332,7 +577,8 @@ public <U, E extends Exception> FailableOptional<U> map(ThrowableFunction<? supe
         }
 
         @Override
-        public <U, E extends Exception> FailableOptional<U> flatMap(ThrowableFunction<? super T, ? extends FailableOptional<U>, E> function) {
+        public <U, E extends Exception> FailableOptional<U> flatMap(
+                ThrowableFunction<? super T, ? extends FailableOptional<U>, E> function) {
             @SuppressWarnings("unchecked")
             FailableOptional<U> failed = (FailableOptional<U>) this;
             return failed;