Merge pull request #21 from rformassspectrometry/jomain

fix: import of Alabaster MsBackendMetaboLights

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: MsIO
 Title: Serializing and restoring/importing mass spectrometry data objects
-Version: 0.0.7
+Version: 0.0.8
 Authors@R:
     c(person(given = "Johannes", family = "Rainer",
              email = "[email protected]",
@@ -70,4 +70,4 @@ Collate:
     'mzTabParam.R'
     'XcmsExperiment.R'
     'utils.R'
-    'zzz.R'
+    'zzz.R'

NEWS.md

@@ -1,5 +1,10 @@
 # Version 0.0
 
+## Changes in 0.0.8
+
+- Fix bug in `readObject()` for `MsBackendMetaboLights` that would not
+  update/fix the local path to the cached data files.
+
 ## Changes in 0.0.7
 
 - Add `saveObject()` for `MsBackendMetaboLights`.
@@ -25,4 +30,4 @@
 
 ## Changes in 0.0.2
 
-- Refactor code for text-based import and export of MS data objects.
+- Refactor code for text-based import and export of MS data objects.

R/MsBackendMetaboLights.R

@@ -47,7 +47,7 @@ readAlabasterMsBackendMetaboLights <- function(path = character(),
     be <- MsBackendMetaboLights::MsBackendMetaboLights()
     slot(be, "spectraData", check = FALSE) <- sdata
     slot(be, "peaksVariables", check = FALSE) <- pvars
-    MsBackendMetaboLights::mtbls_sync(be, offline = offline)
+    be <- MsBackendMetaboLights::mtbls_sync(be, offline = offline)
     validObject(be)
     be
 }
@@ -69,4 +69,4 @@ setMethod("readMsObject", signature(object = "MsBackendMetaboLights",
           function(object, param, offline = FALSE) {
               readAlabasterMsBackendMetaboLights(path = param@path,
                                                  offline = offline)
-          })
+          })