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[AUTO] Update data #247

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Brief description

This is an automatically generated PR.
The following steps are all automatically performed:

  • Fetch raw data
  • Map raw data to DwC standard and save the output in ./data/processed
  • Get an overview of the changes
  • Run some tests, e.g. check the uniqueness of occurrenceID, check that all occurrences have a eventID and scientificName, ...

Note to the reviewer: the workflow automation is still in a development phase. Please, check the output thoroughly before merging to main. In case, improve the data fecthing fetch_data.Rmd, the mapping dwc_mapping.Rmd, both in ./src or the GitHub workflows fetch-data.yaml and mapping_and_testing.yaml in ./.github/workflows.

Files changed:
M	data/processed/occurrence.csv
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PietrH commented Dec 16, 2024

Accidentally reset reporting script, now disagrees with Git diff. It might have some bugs that I fixed but didn't commit 😞

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PietrH commented Dec 16, 2024

1098 new records, 22 deleted records. No new species.

12 species:

scientificName n
Rattus norvegicus 898
Ondatra zibethicus 71
Columba livia domestica 38
Felis catus domestica 37
Muridae 20
Anatidae 18
Castor fiber 4
Talpa europaea 3
Vespa velutina 3
Gallus gallus domesticus 2
Heracleum mantegazzianum 2
Procambarus 2

On 6 days:

date n
2023-07-31 18
2024-12-09 267
2024-12-10 277
2024-12-11 237
2024-12-12 162
2024-12-13 137

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