check taxon info #282
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| on: | |
| schedule: | |
| - cron: "0 3 * * *" | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - data/reference/** | |
| - src/** | |
| workflow_dispatch: | |
| branches: [ main ] | |
| name: check taxon info | |
| jobs: | |
| mapping: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Get branch name | |
| run: | | |
| git branch --show-current | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| - name: Setup pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Install linux libraries | |
| run: | | |
| sudo apt install libsodium-dev | |
| sudo apt-get install libcurl4-openssl-dev | |
| sudo apt-get install libgdal-dev libproj-dev | |
| sudo apt install libudunits2-dev | |
| - name: Install R packages | |
| run: | | |
| source("src/install_packages.R") | |
| shell: Rscript {0} | |
| - name: Retrieve and compare taxon keys | |
| run: | | |
| source("src/run_retrieve_compare_taxon_keys.R") | |
| shell: Rscript {0} |