Merge pull request #145 from rvandewater/rename-kf

Rename kf to kidney_function
rvandewater · Jan 30, 2024 · 1e3b083 · 1e3b083
2 parents 274ad49 + bdd20d7
commit 1e3b083
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Showing 14 changed files with 21 additions and 20 deletions.
diff --git a/.gitignore b/.gitignore
@@ -127,4 +127,5 @@ wandb/
 .vscode/launch.json
 yaib_logs/
 *.ckpt
-*.csv
+*.csv
+!demo_data/*/*/attrition.csv
diff --git a/demo_data/kf/eicu_demo/attrition.csv → ...a/kidney_function/eicu_demo/attrition.csv b/demo_data/kf/eicu_demo/attrition.csv → ...a/kidney_function/eicu_demo/attrition.csv
diff --git a/demo_data/kf/eicu_demo/dyn.parquet → ...ata/kidney_function/eicu_demo/dyn.parquet b/demo_data/kf/eicu_demo/dyn.parquet → ...ata/kidney_function/eicu_demo/dyn.parquet
diff --git a/demo_data/kf/eicu_demo/outc.parquet → ...ta/kidney_function/eicu_demo/outc.parquet b/demo_data/kf/eicu_demo/outc.parquet → ...ta/kidney_function/eicu_demo/outc.parquet
diff --git a/demo_data/kf/eicu_demo/sta.parquet → ...ata/kidney_function/eicu_demo/sta.parquet b/demo_data/kf/eicu_demo/sta.parquet → ...ata/kidney_function/eicu_demo/sta.parquet
diff --git a/demo_data/kf/mimic_demo/attrition.csv → .../kidney_function/mimic_demo/attrition.csv b/demo_data/kf/mimic_demo/attrition.csv → .../kidney_function/mimic_demo/attrition.csv
diff --git a/demo_data/kf/mimic_demo/dyn.parquet → ...ta/kidney_function/mimic_demo/dyn.parquet b/demo_data/kf/mimic_demo/dyn.parquet → ...ta/kidney_function/mimic_demo/dyn.parquet
diff --git a/demo_data/kf/mimic_demo/outc.parquet → ...a/kidney_function/mimic_demo/outc.parquet b/demo_data/kf/mimic_demo/outc.parquet → ...a/kidney_function/mimic_demo/outc.parquet
diff --git a/demo_data/kf/mimic_demo/sta.parquet → ...ta/kidney_function/mimic_demo/sta.parquet b/demo_data/kf/mimic_demo/sta.parquet → ...ta/kidney_function/mimic_demo/sta.parquet
diff --git a/experiments/benchmark_regression.yml b/experiments/benchmark_regression.yml
@@ -21,10 +21,10 @@ parameters:
       - ../data/los/hirid
       - ../data/los/eicu
       - ../data/los/aumc
-      - ../data/kf/miiv
-      - ../data/kf/hirid
-      - ../data/kf/eicu
-      - ../data/kf/aumc
+      - ../data/kidney_function/miiv
+      - ../data/kidney_function/hirid
+      - ../data/kidney_function/eicu
+      - ../data/kidney_function/aumc
   model:
     values:
       - ElasticNet

diff --git a/experiments/demo_benchmark_regression.yml b/experiments/demo_benchmark_regression.yml
@@ -19,8 +19,8 @@ parameters:
     values:
       - demo_data/los/eicu_demo
       - demo_data/los/mimic_demo
-      - demo_data/kf/eicu_demo
-      - demo_data/kf/mimic_demo
+      - demo_data/kidney_function/eicu_demo
+      - demo_data/kidney_function/mimic_demo
   model:
     values:
       - ElasticNet

diff --git a/experiments/experiment_eval_pooled.yml b/experiments/experiment_eval_pooled.yml
@@ -37,10 +37,10 @@ parameters:
       - ../data/los/hirid
       - ../data/los/eicu
       - ../data/los/aumc
-      - ../data/kf/miiv
-      - ../data/kf/hirid
-      - ../data/kf/eicu
-      - ../data/kf/aumc
+      - ../data/kidney_function/miiv
+      - ../data/kidney_function/hirid
+      - ../data/kidney_function/eicu
+      - ../data/kidney_function/aumc
   model:
     values:
       - GRU

diff --git a/experiments/experiment_full_training.yml b/experiments/experiment_full_training.yml
@@ -34,10 +34,10 @@ parameters:
       - ../data/los/hirid
       - ../data/los/eicu
       - ../data/los/aumc
-      - ../data/kf/miiv
-      - ../data/kf/hirid
-      - ../data/kf/eicu
-      - ../data/kf/aumc
+      - ../data/kidney_function/miiv
+      - ../data/kidney_function/hirid
+      - ../data/kidney_function/eicu
+      - ../data/kidney_function/aumc
   model:
     values:
       - GRU

diff --git a/experiments/experiment_pooled.yml b/experiments/experiment_pooled.yml
@@ -36,11 +36,11 @@ parameters:
       - ../data/sepsis/aumc_eicu_miiv_10000
       - ../data/sepsis/aumc_hirid_miiv_10000
       - ../data/sepsis/aumc_hirid_eicu_miiv_10000
-      - ../data/kf/aumc_hirid_eicu_10000
-      - ../data/kf/hirid_eicu_miiv_10000
-      - ../data/kf/aumc_eicu_miiv_10000
-      - ../data/kf/aumc_hirid_miiv_10000
-      - ../data/kf/aumc_hirid_eicu_miiv_10000
+      - ../data/kidney_function/aumc_hirid_eicu_10000
+      - ../data/kidney_function/hirid_eicu_miiv_10000
+      - ../data/kidney_function/aumc_eicu_miiv_10000
+      - ../data/kidney_function/aumc_hirid_miiv_10000
+      - ../data/kidney_function/aumc_hirid_eicu_miiv_10000
       - ../data/los/aumc_hirid_eicu_10000
       - ../data/los/hirid_eicu_miiv_10000
       - ../data/los/aumc_eicu_miiv_10000