Additional Core/Peripheral Classification Methods #212
Workflow file for this run
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| ## This file is part of coronet, which is free software: you | |
| ## can redistribute it and/or modify it under the terms of the GNU General | |
| ## Public License as published by the Free Software Foundation, version 2. | |
| ## | |
| ## This program is distributed in the hope that it will be useful, | |
| ## but WITHOUT ANY WARRANTY; without even the implied warranty of | |
| ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
| ## GNU General Public License for more details. | |
| ## | |
| ## You should have received a copy of the GNU General Public License along | |
| ## with this program; if not, write to the Free Software Foundation, Inc., | |
| ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. | |
| ## | |
| ## Copyright 2023-2024 by Maximilian Löffler <[email protected]> | |
| ## Copyright 2024 by Thomas Bock <[email protected]> | |
| ## All Rights Reserved. | |
| name: Build Status | |
| on: | |
| pull_request: | |
| branches: [ master, dev ] | |
| types: [ opened, reopened, synchronize ] | |
| push: | |
| branches: [ master, dev ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| name: Build | |
| # change to 'runs-on: self-hosted' to run on self-hosted runners (https://docs.github.com/en/actions/using-jobs/choosing-the-runner-for-a-job) | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| r-version: ['4.0', '4.1', '4.2', '4.3', '4.4', 'latest'] | |
| steps: | |
| - name: Checkout Repo | |
| uses: actions/checkout@v4 | |
| - name: Update system | |
| run: | | |
| sudo apt-get update -y | |
| sudo apt-get install --assume-yes libxml2 | |
| sudo apt-get install --assume-yes libxml2-dev | |
| sudo apt-get install --assume-yes libglpk-dev | |
| sudo apt-get install --assume-yes libfontconfig1-dev | |
| sudo apt-get install --assume-yes libssl-dev | |
| sudo apt-get install --assume-yes libcurl4-openssl-dev | |
| sudo su -c "echo 'deb https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/' >> /etc/apt/sources.list" | |
| wget -qO- https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc | sudo tee -a /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc | |
| - name: Set up R ${{ matrix.r-version }} | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.r-version }} | |
| - name: Install dependencies | |
| run: Rscript install.R | |
| - name: Run Tests | |
| id: run_tests | |
| run: Rscript tests.R | |
| - name: Run Showcase | |
| run: Rscript showcase.R | |
| if: always() | |
| - name: Generate Coverage Report | |
| id: gen_coverage | |
| run: Rscript coverage.R | |
| if: matrix.r-version == 'latest' && steps.run_tests.outcome == 'success' | |
| - name: Store coverage report | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-report | |
| path: cobertura.xml | |
| if: matrix.r-version == 'latest' && steps.gen_coverage.outcome == 'success' | |
| upload-coverage-report: | |
| name: Upload coverage report | |
| needs: build | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Load coverage report | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: coverage-report | |
| - name: Upload Report to CodeCov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: cobertura.xml | |
| disable_search: true | |
| fail_ci_if_error: true | |
| verbose: true | |