Skip to content

v0.3.0
Compare
Choose a tag to compare
@sebastian-gregoricchio sebastian-gregoricchio released this 12 Aug 13:25
· 96 commits to main since this release
0.3.0
7959b3a
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

v0.3.0 - August 15th 2022

  • Improvement of sort.bed usage: a) removed redundant "export.bed" option (now it is sufficient to add a file name in the "export.file.name" parameter if exporting is wished), b) added the "unique.regions" option, c) minor bug fixed in sort.bed for input class check
  • Added option 'verbose' for sort.bed and collapse.bed functions
  • Added citation file to cite the article associated to this package
  • Improvement of the vignette
  • Changed the default value for command string parameter for intersect.bed and computeMatrix.deeptools functions
  • Bug-fixing for the handling of data.frames inputs in the function density.matrix
  • Bug-fixing for the handling of bigWig inputs that do not contain 'chr' in the seqnames/chromosome names for the function density.matrix
  • Added stranded option in the function density.matrix, allowing the possibility to reverse the signal of strand '-' regions
  • Addition of diffloop dependence used to handle bigWig inputs that do not contain 'chr' in the seqnames for the function density.matrix
  • Added new function get.single.base.score.bw
  • Added new function plot.density.profile.smooth
  • Added new function genomic.tracks
  • Added new function qPCR.rna.exp
  • Added new function qPCR.results example
  • Updated dependencies to satisfy genomic.tracks and qPCR.rna.exp requirements: colorspace, ggbio, ggforce, GenomicRanges, AnnotationFilter, EnsDb.Hsapiens.v75, EnsDb.Hsapiens.v86, EnsDb.Mmusculus.v79, openssl, readxl, jpeg

Full Changelog: 0.2.0...0.3.0

Full Changelog: 0.2.0...0.3.0

Assets 2
Loading