Update requirements and increase version to 0.6.0 (#316)

Update requirements and constraints, and increase version to 0.6.0 in preparation for release.

common_build/format/constraints.txt

@@ -1,16 +1,16 @@
 appdirs==1.4.4
-black==21.6b0
+black==21.7b0
 click==8.0.1
 flake8==3.9.2
-importlib-metadata==4.5.0
-isort==5.8.0
+importlib-metadata==4.6.3
+isort==5.9.3
 mccabe==0.6.1
 mypy-extensions==0.4.3
-pathspec==0.8.1
+pathspec==0.9.0
 pycodestyle==2.7.0
 pyflakes==2.3.1
-regex==2021.4.4
-toml==0.10.2
+regex==2021.8.3
+tomli==1.2.0
 typed-ast==1.4.3
-typing-extensions==3.10.0.0
-zipp==3.4.1
+typing-extensions==3.7.4.3
+zipp==3.5.0

common_build/format/requirements.txt

@@ -15,3 +15,5 @@
 black
 flake8
 isort
+# pin typing-extensions so we're compatible with venvs that have tensorflow installed
+typing-extensions~=3.7.4

common_build/taskipy/constraints.txt

@@ -1,28 +1,28 @@
 appdirs==1.4.4
-astroid==2.5.6
+astroid==2.6.6
 attrs==21.2.0
-black==21.6b0
+black==21.7b0
 click==8.0.1
 colorama==0.4.4
 coverage==5.5
 filelock==3.0.12
 flake8==3.9.2
-importlib-metadata==4.5.0
+importlib-metadata==4.6.3
 iniconfig==1.1.1
-isort==5.8.0
+isort==5.9.3
 lazy-object-proxy==1.6.0
 mccabe==0.6.1
 mslex==0.3.0
-mypy==0.902
+mypy==0.910
 mypy-extensions==0.4.3
-packaging==20.9
-pathspec==0.8.1
+packaging==21.0
+pathspec==0.9.0
 pluggy==0.13.1
 psutil==5.8.0
 py==1.10.0
 pycodestyle==2.7.0
 pyflakes==2.3.1
-pylint==2.8.3
+pylint==2.9.6
 pyparsing==2.4.7
 pytest==6.2.4
 pytest-black==0.3.12
@@ -31,10 +31,11 @@ pytest-flake8==1.0.7
 pytest-isort==2.0.0
 pytest-mypy==0.8.1
 pytest-pylint==0.18.0
-regex==2021.4.4
+regex==2021.8.3
 taskipy==1.8.1
 toml==0.10.2
+tomli==1.2.0
 typed-ast==1.4.3
-typing-extensions==3.10.0.0
+typing-extensions==3.7.4.3
 wrapt==1.12.1
-zipp==3.4.1
+zipp==3.5.0

common_build/taskipy/requirements.txt

@@ -21,3 +21,6 @@ pytest-flake8
 pytest-isort
 pytest-mypy
 pytest-pylint
+# pin typing-extensions so we're compatible with venvs that have tensorflow installed
+typing-extensions~=3.7.4
+

common_build/types/constraints.txt

@@ -1,5 +1,5 @@
-mypy==0.902
+mypy==0.910
 mypy-extensions==0.4.3
 toml==0.10.2
 typed-ast==1.4.3
-typing-extensions==3.10.0.0
+typing-extensions==3.7.4.3

common_build/types/requirements.txt

@@ -13,3 +13,6 @@
 # limitations under the License.
 
 mypy
+# pin typing-extensions so we're compatible with venvs that have tensorflow installed
+typing-extensions~=3.7.4
+

docs/conf.py

@@ -51,7 +51,7 @@
 author = "The Trieste Contributors"
 
 # The full version, including alpha/beta/rc tags
-release = "0.5.0"
+release = "0.6.0"
 
 # -- General configuration ---------------------------------------------------
 

docs/constraints.txt

@@ -1,26 +1,26 @@
 alabaster==0.7.12
-astroid==2.5.8
+astroid==2.6.6
 async-generator==1.10
 attrs==21.2.0
 Babel==2.9.1
 backcall==0.2.0
 beautifulsoup4==4.9.3
-bleach==3.3.0
+bleach==4.0.0
 certifi==2021.5.30
-chardet==4.0.0
+charset-normalizer==2.0.4
 decorator==5.0.9
 defusedxml==0.7.1
 docutils==0.16
 entrypoints==0.3
-idna==2.10
+idna==3.2
 imagesize==1.2.0
-importlib-metadata==4.5.0
-ipython==7.24.1
+importlib-metadata==4.6.3
+ipython==7.26.0
 ipython-genutils==0.2.0
 jedi==0.18.0
 Jinja2==3.0.1
 jsonschema==3.2.0
-jupyter-client==6.2.0
+jupyter-client==6.1.12
 jupyter-core==4.7.1
 jupyterlab-pygments==0.1.2
 latexcodec==2.0.1
@@ -29,33 +29,33 @@ MarkupSafe==2.0.1
 matplotlib-inline==0.1.2
 mistune==0.8.4
 nbclient==0.5.3
-nbconvert==6.0.7
+nbconvert==6.1.0
 nbformat==5.1.3
 nbsphinx==0.8.6
 nest-asyncio==1.5.1
-packaging==20.9
+packaging==21.0
 pandocfilters==1.4.3
 parso==0.8.2
 pexpect==4.8.0
 pickleshare==0.7.5
-prompt-toolkit==3.0.18
+prompt-toolkit==3.0.19
 ptyprocess==0.7.0
 pybtex==0.24.0
-pybtex-docutils==1.0.0
+pybtex-docutils==1.0.1
 pydata-sphinx-theme==0.6.3
 Pygments==2.9.0
 pyparsing==2.4.7
-pyrsistent==0.17.3
-python-dateutil==2.8.1
+pyrsistent==0.18.0
+python-dateutil==2.8.2
 pytz==2021.1
 PyYAML==5.4.1
 pyzmq==22.1.0
-requests==2.25.1
+requests==2.26.0
 six==1.16.0
 snowballstemmer==2.1.0
 soupsieve==2.2.1
-Sphinx==4.0.2
-sphinx-autoapi==1.8.1
+Sphinx==4.1.2
+sphinx-autoapi==1.8.3
 sphinxcontrib-applehelp==1.0.2
 sphinxcontrib-bibtex==2.3.0
 sphinxcontrib-devhelp==1.0.2
@@ -67,10 +67,10 @@ testpath==0.5.0
 tornado==6.1
 traitlets==5.0.5
 typed-ast==1.4.3
-typing-extensions==3.10.0.0
+typing-extensions==3.7.4.3
 Unidecode==1.2.0
-urllib3==1.26.5
+urllib3==1.26.6
 wcwidth==0.2.5
 webencodings==0.5.1
 wrapt==1.12.1
-zipp==3.4.1
+zipp==3.5.0

docs/notebooks/constraints.txt

@@ -1,50 +1,51 @@
-absl-py==0.12.0
-anyio==3.1.0
+absl-py==0.13.0
+anyio==3.3.0
 argon2-cffi==20.1.0
 astunparse==1.6.3
 async-generator==1.10
 attrs==21.2.0
 Babel==2.9.1
 backcall==0.2.0
-bleach==3.3.0
+bleach==4.0.0
 cached-property==1.5.2
 cachetools==4.2.2
 certifi==2021.5.30
-cffi==1.14.5
-chardet==4.0.0
+cffi==1.14.6
+charset-normalizer==2.0.4
 cloudpickle==1.6.0
 cycler==0.10.0
 dataclasses==0.6
+debugpy==1.4.1
 decorator==5.0.9
 defusedxml==0.7.1
 Deprecated==1.2.12
 dm-tree==0.1.6
 entrypoints==0.3
 flatbuffers==1.12
 gast==0.4.0
-google-auth==1.31.0
-google-auth-oauthlib==0.4.4
+google-auth==1.34.0
+google-auth-oauthlib==0.4.5
 google-pasta==0.2.0
 gpflow==2.2.1
 gpflux==0.1.0
 grpcio==1.34.1
 h5py==3.1.0
-idna==2.10
-importlib-metadata==4.5.0
-ipykernel==5.5.5
-ipython==7.24.1
+idna==3.2
+importlib-metadata==3.10.1
+ipykernel==6.0.3
+ipython==7.26.0
 ipython-genutils==0.2.0
 jedi==0.18.0
 Jinja2==3.0.1
-json5==0.9.5
+json5==0.9.6
 jsonschema==3.2.0
-jupyter-client==6.2.0
+jupyter-client==6.1.12
 jupyter-core==4.7.1
-jupyter-server==1.8.0
-jupyterlab==3.0.16
+jupyter-server==1.10.2
+jupyterlab==3.1.1
 jupyterlab-pygments==0.1.2
-jupyterlab-server==2.6.0
-jupytext==1.11.3
+jupyterlab-server==2.6.2
+jupytext==1.11.4
 keras-nightly==2.5.0.dev2021032900
 Keras-Preprocessing==1.1.2
 kiwisolver==1.3.1
@@ -58,61 +59,62 @@ mistune==0.8.4
 multipledispatch==0.6.0
 nbclassic==0.3.1
 nbclient==0.5.3
-nbconvert==6.0.7
+nbconvert==6.1.0
 nbformat==5.1.3
 nest-asyncio==1.5.1
 notebook==6.4.0
 numpy==1.19.5
 oauthlib==3.1.1
 opt-einsum==3.3.0
-packaging==20.9
+packaging==21.0
 pandas==0.25.3
 pandocfilters==1.4.3
 parso==0.8.2
 pexpect==4.8.0
 pickleshare==0.7.5
-Pillow==8.2.0
-plotly==4.14.3
+Pillow==8.3.1
+plotly==5.1.0
 prometheus-client==0.11.0
-prompt-toolkit==3.0.18
+prompt-toolkit==3.0.19
 protobuf==3.17.3
 ptyprocess==0.7.0
 pyasn1==0.4.8
 pyasn1-modules==0.2.8
 pycparser==2.20
 Pygments==2.9.0
 pyparsing==2.4.7
-pyrsistent==0.17.3
-python-dateutil==2.8.1
+pyrsistent==0.18.0
+python-dateutil==2.8.2
 pytz==2021.1
 PyYAML==5.4.1
 pyzmq==22.1.0
-requests==2.25.1
+requests==2.26.0
 requests-oauthlib==1.3.0
-retrying==1.3.3
+requests-unixsocket==0.2.0
 rsa==4.7.2
-scipy==1.6.3
-Send2Trash==1.5.0
+scipy==1.7.1
+Send2Trash==1.7.1
 six==1.15.0
 sniffio==1.2.0
 tabulate==0.8.9
+tenacity==8.0.1
 tensorboard==2.5.0
 tensorboard-data-server==0.6.1
 tensorboard-plugin-wit==1.8.0
 tensorflow==2.5.0
 tensorflow-estimator==2.5.0
-tensorflow-probability==0.12.2
+tensorflow-probability==0.13.0
 termcolor==1.1.0
 terminado==0.10.1
 testpath==0.5.0
 toml==0.10.2
 tornado==6.1
 traitlets==5.0.5
 typing-extensions==3.7.4.3
-urllib3==1.26.5
+urllib3==1.26.6
 wcwidth==0.2.5
 webencodings==0.5.1
 websocket-client==1.1.0
 Werkzeug==2.0.1
 wrapt==1.12.1
-zipp==3.4.1
+zipp==3.5.0

docs/requirements.txt

@@ -18,3 +18,6 @@ pydata-sphinx-theme
 ipython
 nbsphinx
 sphinxcontrib-bibtex
+# pin typing-extensions so we're compatible with venvs that have tensorflow installed
+typing-extensions~=3.7.4
+

setup.py

@@ -19,7 +19,7 @@
 
 setup(
     name="trieste",
-    version="0.5.0",
+    version="0.6.0",
     author="The Trieste contributors",
     author_email="[email protected]",
     description="A Bayesian optimization research toolbox built on TensorFlow",
@@ -41,8 +41,7 @@
         "gpflow==2.2.*",
         "gpflux==0.1.*",
         "numpy",
-        # tensorflow!=2.2.0,!=2.3.0 because of https://github.com/advisories/GHSA-8fxw-76px-3rxv
-        "tensorflow>=2.1,!=2.2.0,!=2.3.0",
-        "tensorflow-probability>=0.9",
+        "tensorflow>=2.4",
+        "tensorflow-probability>=0.12",
     ],
 )