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[MISC] automatic linting
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@seqan-actions
seqan-actions committed Feb 29, 2024
1 parent 62fd6fe commit dfcf18f
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Showing 2 changed files with 36 additions and 38 deletions.
37 changes: 18 additions & 19 deletions include/seqan3/io/sam_file/format_bam.hpp
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Original file line number Diff line number Diff line change
Expand Up @@ -260,25 +260,24 @@ template <typename stream_type, // constraints checked by file
typename tag_dict_type,
typename e_value_type,
typename bit_score_type>
inline void
format_bam::read_alignment_record(stream_type & stream,
sam_file_input_options<seq_legal_alph_type> const & options,
ref_seqs_type & ref_seqs,
sam_file_header<ref_ids_type> & header,
stream_pos_type & position_buffer,
seq_type & seq,
qual_type & qual,
id_type & id,
ref_seq_type & SEQAN3_DOXYGEN_ONLY(ref_seq),
ref_id_type & ref_id,
ref_offset_type & ref_offset,
cigar_type & cigar_vector,
flag_type & flag,
mapq_type & mapq,
mate_type & mate,
tag_dict_type & tag_dict,
e_value_type & SEQAN3_DOXYGEN_ONLY(e_value),
bit_score_type & SEQAN3_DOXYGEN_ONLY(bit_score))
inline void format_bam::read_alignment_record(stream_type & stream,
sam_file_input_options<seq_legal_alph_type> const & options,
ref_seqs_type & ref_seqs,
sam_file_header<ref_ids_type> & header,
stream_pos_type & position_buffer,
seq_type & seq,
qual_type & qual,
id_type & id,
ref_seq_type & SEQAN3_DOXYGEN_ONLY(ref_seq),
ref_id_type & ref_id,
ref_offset_type & ref_offset,
cigar_type & cigar_vector,
flag_type & flag,
mapq_type & mapq,
mate_type & mate,
tag_dict_type & tag_dict,
e_value_type & SEQAN3_DOXYGEN_ONLY(e_value),
bit_score_type & SEQAN3_DOXYGEN_ONLY(bit_score))
{
static_assert(detail::decays_to_ignore_v<ref_offset_type>
|| detail::is_type_specialisation_of_v<ref_offset_type, std::optional>,
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37 changes: 18 additions & 19 deletions include/seqan3/io/sam_file/format_sam.hpp
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Original file line number Diff line number Diff line change
Expand Up @@ -354,25 +354,24 @@ template <typename stream_type, // constraints checked by file
typename tag_dict_type,
typename e_value_type,
typename bit_score_type>
inline void
format_sam::read_alignment_record(stream_type & stream,
sam_file_input_options<seq_legal_alph_type> const & options,
ref_seqs_type & ref_seqs,
sam_file_header<ref_ids_type> & header,
stream_pos_type & position_buffer,
seq_type & seq,
qual_type & qual,
id_type & id,
ref_seq_type & SEQAN3_DOXYGEN_ONLY(ref_seq),
ref_id_type & ref_id,
ref_offset_type & ref_offset,
cigar_type & cigar_vector,
flag_type & flag,
mapq_type & mapq,
mate_type & mate,
tag_dict_type & tag_dict,
e_value_type & SEQAN3_DOXYGEN_ONLY(e_value),
bit_score_type & SEQAN3_DOXYGEN_ONLY(bit_score))
inline void format_sam::read_alignment_record(stream_type & stream,
sam_file_input_options<seq_legal_alph_type> const & options,
ref_seqs_type & ref_seqs,
sam_file_header<ref_ids_type> & header,
stream_pos_type & position_buffer,
seq_type & seq,
qual_type & qual,
id_type & id,
ref_seq_type & SEQAN3_DOXYGEN_ONLY(ref_seq),
ref_id_type & ref_id,
ref_offset_type & ref_offset,
cigar_type & cigar_vector,
flag_type & flag,
mapq_type & mapq,
mate_type & mate,
tag_dict_type & tag_dict,
e_value_type & SEQAN3_DOXYGEN_ONLY(e_value),
bit_score_type & SEQAN3_DOXYGEN_ONLY(bit_score))
{
static_assert(detail::decays_to_ignore_v<ref_offset_type>
|| detail::is_type_specialisation_of_v<ref_offset_type, std::optional>,
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