Pre retreat schedule

individual preperation

Mo 22.02. – Fr. 24.02.

• Detailed Planning by Rene and Hannes
• the material from the CPP sessions will be completed, uploaded
• please read up on the sessions you missed and note down questions
• it is expected that everyone have attended or read through the CPP session content

tech talk

Mo 06.03. 14:00

• Technical SeqAn3 talk by Rene and Hannes
• Contents: Code-Style, Syntax, paradigms, function and class structures, namespaces, compiler requirements...
• Target audience: everyone who will take part in the retreat

module workgroups

The workgroups will discuss ideas for the given module and draft requirements. They will come up with a concrete plan of what we want to achieve in this area during the retreat. The time is roughly 4 hours + lunch break, likely between 11:00 and 16:00. If your name does not appear for any session, please feel free to add it to one as long as the total number of people is <= 5 so that we are still productive 😄

Tu 07.03.

• Alphabets module and container module workgroup meeting
• Participants: Hannes, Rene, Svenja, Christopher, Sara

We 08.03.

• Sequence IO workgroup meeting
• Participants: Hannes, Rene, Temesgen, Svenja

Th 09.03.

• Index module workgroup meeting
• Participants: Chris, Hannes, Rene

Fr 10.03.

• Alignment IO (SAM, BAM, Blast..) workgroup meeting
• Participants: Temesgen, Hannes, Rene, Jörg, Kerstin

Mo 13.03.

• Alignment module workgroup meeting
• Participants: Rene, Hannes, Marcel, Jörg, David, Marie, Chenxu

wrap-up and retreat planning

Di 14.03. – Mi 15.03.

• Final preparation of retreat, including detailed schedule
• by Hannes and Rene and hopefully at least two volunteers

final TODOs

• create repositories
• update schedule
• final e-mail with link to new schedule, c++ resources, gcc7 requirement, CLA...
• extra email simon regarding sdsl, license change, header-only...
• set up linux ci with gcc7
• set