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shenwei356 committed Sep 1, 2024
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25 changes: 20 additions & 5 deletions introduction/index.html
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<meta name="description" content="LexicMap is a nucleotide sequence alignment tool for efficiently querying gene, plasmid, viral, or long-read sequences against up to millions of prokaryotic genomes.
Table of contents Table of contents Features Introduction Quick start Performance Indexing Searching Installation Algorithm overview Citation Support License Related projects Features LexicMap is scalable to up to millions of prokaryotic genomes. The sensitivity of LexicMap is comparable with Blastn. The alignment is fast and memory-efficient. LexicMap is easy to install, we provide binary files with no dependencies for Linux, Windows, MacOS (x86 and arm CPUs)." />
Preprint:
Wei Shen and Zamin Iqbal. (2024) LexicMap: efficient sequence alignment against millions of prokaryotic genomes. bioRxiv. https://doi.org/10.1101/2024.08.30.610459
Table of contents Table of contents Features Introduction Quick start Performance Indexing Searching Installation Algorithm overview Citation Support License Related projects Features LexicMap is scalable to up to millions of prokaryotic genomes." />

<title>Introduction | LexicMap: efficient sequence alignment against millions of prokaryotic genomes​</title>

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/>
<meta property="og:site_name" content="LexicMap: efficient sequence alignment against millions of prokaryotic genomes\u200b" />
<meta property="og:description" content="LexicMap is a nucleotide sequence alignment tool for efficiently querying gene, plasmid, viral, or long-read sequences against up to millions of prokaryotic genomes.
Table of contents Table of contents Features Introduction Quick start Performance Indexing Searching Installation Algorithm overview Citation Support License Related projects Features LexicMap is scalable to up to millions of prokaryotic genomes. The sensitivity of LexicMap is comparable with Blastn. The alignment is fast and memory-efficient. LexicMap is easy to install, we provide binary files with no dependencies for Linux, Windows, MacOS (x86 and arm CPUs)." />
Preprint:
Wei Shen and Zamin Iqbal. (2024) LexicMap: efficient sequence alignment against millions of prokaryotic genomes. bioRxiv. https://doi.org/10.1101/2024.08.30.610459
Table of contents Table of contents Features Introduction Quick start Performance Indexing Searching Installation Algorithm overview Citation Support License Related projects Features LexicMap is scalable to up to millions of prokaryotic genomes." />
<meta property="og:type" content="article" />
<meta property="og:url" content="https://bioinf.shenwei.me/LexicMap/introduction/" />

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<meta name="twitter:card" content="summary" />
<meta name="twitter:title" content="Introduction" />
<meta name="twitter:description" content="LexicMap is a nucleotide sequence alignment tool for efficiently querying gene, plasmid, viral, or long-read sequences against up to millions of prokaryotic genomes.
Table of contents Table of contents Features Introduction Quick start Performance Indexing Searching Installation Algorithm overview Citation Support License Related projects Features LexicMap is scalable to up to millions of prokaryotic genomes. The sensitivity of LexicMap is comparable with Blastn. The alignment is fast and memory-efficient. LexicMap is easy to install, we provide binary files with no dependencies for Linux, Windows, MacOS (x86 and arm CPUs)." />
Preprint:
Wei Shen and Zamin Iqbal. (2024) LexicMap: efficient sequence alignment against millions of prokaryotic genomes. bioRxiv. https://doi.org/10.1101/2024.08.30.610459
Table of contents Table of contents Features Introduction Quick start Performance Indexing Searching Installation Algorithm overview Citation Support License Related projects Features LexicMap is scalable to up to millions of prokaryotic genomes." />


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/></a></p>
<p>LexicMap is a <strong>nucleotide sequence alignment</strong> tool for efficiently querying gene, plasmid, viral, or long-read sequences against up to <strong>millions of prokaryotic genomes</strong>.</p>
<p>Preprint:</p>
<blockquote>
<p>Wei Shen and Zamin Iqbal.
(2024) LexicMap: efficient sequence alignment against millions of prokaryotic genomes.
bioRxiv. <a
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2 changes: 1 addition & 1 deletion search/en.data.min.json
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