bayes estimator of wishart matrix: ppegolo/wishart

.github/workflows/ci.yml

@@ -9,21 +9,21 @@ jobs:
 
     steps:
     - name: Checkout
-      uses: actions/checkout@v2
+      uses: actions/checkout@v4
 
     - name: Cache python dependencies
       id: cache-pip
-      uses: actions/cache@v1
+      uses: actions/cache@v4
       with:
         path: ~/.cache/pip
         key: pip-pre-commit-${{ hashFiles('**/setup.json') }}
         restore-keys:
           pip-pre-commit-
 
-    - name: Set up Python 3.8
-      uses: actions/setup-python@v2
+    - name: Set up Python 3.9
+      uses: actions/setup-python@v5
       with:
-        python-version: '3.8'
+        python-version: '3.9'
 
     - name: Install python dependencies
       run:
@@ -39,23 +39,23 @@ jobs:
 
     strategy:
       matrix:
-        python-version: ['3.7', '3.8', '3.9', '3.10', '3.11']
+        python-version: ['3.9', '3.10', '3.11', '3.12', '3.13']
 
     steps:
     - name: Checkout
-      uses: actions/checkout@v2
+      uses: actions/checkout@v4
 
     - name: Cache python dependencies
       id: cache-pip
-      uses: actions/cache@v1
+      uses: actions/cache@v4
       with:
         path: ~/.cache/pip
         key: pip-pre-commit-${{ hashFiles('**/setup.json') }}
         restore-keys:
           pip-pre-commit-
 
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v2
+      uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
 

.github/workflows/publish.yml

@@ -18,10 +18,10 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-    - name: Set up Python 3.8
+    - name: Set up Python 3.9
       uses: actions/setup-python@v2
       with:
-        python-version: '3.8'
+        python-version: '3.9'
     - run: python .github/workflows/check_release_tag.py $GITHUB_REF setup.json
 
   pre-commit:
@@ -41,10 +41,10 @@ jobs:
         restore-keys:
           pip-pre-commit-
 
-    - name: Set up Python 3.8
+    - name: Set up Python 3.9
       uses: actions/setup-python@v2
       with:
-        python-version: '3.8'
+        python-version: '3.9'
 
     - name: Install python dependencies
       run:
@@ -60,7 +60,7 @@ jobs:
 
     strategy:
       matrix:
-        python-version: ['3.7', '3.8', '3.9', '3.10', '3.11']
+        python-version: ['3.9', '3.10', '3.11', '3.12', '3.13']
 
     steps:
     - name: Checkout
@@ -100,10 +100,10 @@ jobs:
     steps:
     - name: Checkout source
       uses: actions/checkout@v2
-    - name: Set up Python 3.8
+    - name: Set up Python 3.9
       uses: actions/setup-python@v2
       with:
-        python-version: '3.8'
+        python-version: '3.9'
     - name: Build package
       run: |
         pip install wheel

.gitignore

@@ -50,6 +50,9 @@ coverage.xml
 # Visual Studio Code
 .vscode/
 
+# idea editor
+.idea
+
 # Translations
 *.mo
 *.pot
@@ -105,3 +108,24 @@ ENV/
 
 # vi swap files
 *.swp
+.DS_Store
+examples/aic_4
+examples/aic_6
+examples/bayesian_analysis_4
+examples/bayesian_analysis_6
+examples/chain.h5
+examples/data_rahman.zip
+examples/dic_4
+examples/dic_6
+examples/data_manager/gpumd/compute.out
+examples/data_manager/gpumd/dump.sample.xyz
+examples/data_manager/gpumd/model.xyz
+examples/data_manager/gpumd/run.in
+examples/data_manager/gpumd/thermo.out
+examples/data_manager/lammps/config.lammpsdata
+examples/data_manager/lammps/dump.sample.lammpstrj
+examples/data_manager/lammps/sample.lammps
+examples/07_example_negative_log_likelihood copy.ipynb
+examples/08_example_optimize_prior .ipynb
+examples/stress_flux_hacked.npy
+sportran/md/maxlike copy.py