smeichle/binf

Contains my python scripts that may commonly be used in bioinformatics

Python Environment (with Anaconda)

Code may be run using a Python environment based on 3.6.x. Replicable environment with biopython.yml

N50

fasta_n50.py computes the N50 for FASTA files Usage: python fasta_n50.py FASTA1 FASTA2

fastq2fasta

Simple python program to convert FASTQ to FASTA Usage: python fastq2fasta.py FASTQ1 FASTQ2

rast2fasta

Parses RAST tabular output and saves the annotated proteins to a fasta file Usage: python rast2fasta.py FASTA1 FASTA2

About Me

Linkedin:

• www.linkedin.com/in/stacy-meichle

Email:

• [email protected]