converted it

scripts/convert_gmt_to_json.groovy

@@ -0,0 +1,21 @@
+#!/usr/bin/env groovy
+import groovy.json.JsonBuilder
+import groovy.json.JsonOutput
+
+def file = new File("9606-go_tcga-bp-all_converted.gmt")
+
+//def builder = new JsonBuilder()
+
+StringBuilder stringBuilder =new StringBuilder()
+List entries = []
+file.splitEachLine("\t"){ List<String> columns ->
+    Map map = new HashMap([golabel:columns[0],goid:columns[1],gene:columns.subList(2,columns.size())])
+    entries.add(map)
+//    def output = JsonOutput.toJson(map)
+//    println output
+//    stringBuilder.append(output)
+}
+
+
+def outputFile = new File("tgac.json")
+outputFile.write(JsonOutput.toJson(entries))