BIMIR: An R package for condition-specific microRNA target prediction by biclustering of big transcriptome data

This is initial release of bimir. ‘bimir’ is an R package developed to generate biclusters of cell condition-specific microRNA targets from large mRNA transcriptome fold change (FC) matrix (a.k.a., FC table; it contains log2 FC values of 20,639 human genes under 5,158 experimental conditions). Besides the primary purpose of this package, it can be applied to create any constant biclusters allowing small number of noises using the progressive bicluster extension (PBE) algorithm. This package is also downloadable from the BIMIR web site (http://btool.org/bimir_dir/).