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add --snarl-sample option to vg stats -R #4478

Merged
merged 1 commit into from
Dec 16, 2024
Merged

add --snarl-sample option to vg stats -R #4478

merged 1 commit into from
Dec 16, 2024

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glennhickey
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Changelog Entry

To be copied to the draft changelog by merger:

  • Add --snarl-sample to vg stats -R. This adds BED-style reference coordinates to the front of each row in the snarl output table, using the input sample to select reference paths. If no selected path is found .'s are written. If multiple paths / intervals find (in case of cyclces), the first one found is printed.

Description

This makes it easier to find and locate giant snarls.

@glennhickey glennhickey merged commit a0d588d into master Dec 16, 2024
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2 participants