kanephora

Scripts and some data for paper 3

run_kiss

• scripts and config files to run iKiss pipeline

bioclim

• worldclim bioclim data version 2.1
• scripts to extract data for all coordinates in Africa and Vietnam

structure

• scripts to run genetic structure on k-mer data sets

gea

• lffm_rda: scripts for extracting k-mer matrix from iKiss pipeline, running LFFM+RDA, and getting matrix of significant k-mers
• map_lfmm: scripts mapping the significant k-mers
• assembly: scripts for assembly of the significant k-mers
• annotation: scripts for running blast on the assembled contigs

offset

• scripts for testing genetic offset using k-mers and SNPs, comparing with Remi's results
• scripts for running genetic offset using external latent factors