fixed h5 retriever #223
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python package | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.8", "3.10"] | |
| os: [ubuntu-latest, ubuntu-20.04, macOS-latest] | |
| venv_activate: ["source pyenv_base/bin/activate"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m venv pyenv_base | |
| ${{ matrix.venv_activate }} | |
| python -m pip install --upgrade pip | |
| python -m pip install flake8 pytest | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| python -m pip install . --upgrade | |
| - name: Lint with flake8 | |
| run: | | |
| ${{ matrix.venv_activate }} | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 ./neonwranglerpy --count --show-source --statistics | |
| yapf -d --recursive ./neonwranglerpy --style=.style.yapf 2>&1 | |
| - name: Test with pytest | |
| run: | | |
| ${{ matrix.venv_activate }} | |
| pytest -v -k "not test_extract_training_data" --cov=./neonwranglerpy --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v1 | |
| if: matrix.os == 'ubuntu-20.04' && matrix.python-version == '3.8' | |
| env: | |
| OS: ${{ runner.os }} | |
| PYTHON: ${{ matrix.python-version }} | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| env_vars: OS,PYTHON |