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@wejlab

W. Evan Johnson Lab

This is the main GitHub home for the research and software projects from Evan Johnson's Lab

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  1. animalcules animalcules Public

    R shiny app for interactive microbiome analysis

    R 55 18

  2. MetaScope MetaScope Public

    An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)

    R 16 7

  3. TBSignatureProfiler TBSignatureProfiler Public

    Profile RNA-seq data using published TB gene signatures

    R 12 12

  4. BatchQC BatchQC Public

    Batch Effects Quality Control Software

    R 6 9

  5. ASSIGN ASSIGN Public

    Adaptive Signature Selection and InteGratioN

    R 2

  6. PathoStat PathoStat Public

    Forked from mani2012/PathoStat

    The purpose of this package is to perform Statistical Analysis on the PathoScope generated reports files.

    R 2

Repositories

Showing 10 of 18 repositories
  • TBSignatureProfiler Public

    Profile RNA-seq data using published TB gene signatures

    wejlab/TBSignatureProfiler’s past year of commit activity
    R 12 12 0 0 Updated Dec 8, 2024
  • MetaScope Public

    An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)

    wejlab/MetaScope’s past year of commit activity
    R 16 GPL-3.0 7 1 1 Updated Nov 27, 2024
  • BatchQC Public

    Batch Effects Quality Control Software

    wejlab/BatchQC’s past year of commit activity
    R 6 9 9 0 Updated Nov 11, 2024
  • metascope-docs Public

    Repository holding documents for the MetaScope website

    wejlab/metascope-docs’s past year of commit activity
    0 0 0 0 Updated Oct 30, 2024
  • LegATo-docs Public

    Docs for the LegATo website

    wejlab/LegATo-docs’s past year of commit activity
    0 0 0 0 Updated Oct 30, 2024
  • LegATo Public

    An R-based Longitudinal mEtaGenomic Analysis Toolkit for microbiome data

    wejlab/LegATo’s past year of commit activity
    R 2 0 0 0 Updated Oct 5, 2024
  • curatedTBExplorer Public

    This is the repository for the curatedTBExplorer shiny interface to view and analyze the curatedTBData

    wejlab/curatedTBExplorer’s past year of commit activity
    R 1 0 4 (1 issue needs help) 0 Updated Oct 2, 2024
  • curatedTBExplorer-docs Public

    Documentation for the curatedTBExplorer

    wejlab/curatedTBExplorer-docs’s past year of commit activity
    0 0 0 0 Updated Sep 16, 2024
  • TBSignatureProfiler-docs Public

    A repository to host the files for the TBSignatureProfiler website.

    wejlab/TBSignatureProfiler-docs’s past year of commit activity
    0 0 0 0 Updated May 7, 2024
  • curatedTBData Public

    Curation of existing TB gene expression datasets

    wejlab/curatedTBData’s past year of commit activity
    R 1 3 0 0 Updated Mar 12, 2024
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