Bump versions for noodles 0.54.0

zaeleus · Oct 19, 2023 · f08447c · f08447c
1 parent 2ae1c91
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Showing 23 changed files with 99 additions and 44 deletions.
diff --git a/README.md b/README.md
@@ -20,7 +20,7 @@ list; and formats, listed as [features]. For example, to work with the BAM
 format, enable the `bam` feature.
 
 ```toml
-noodles = { version = "0.53.0", features = ["bam"] }
+noodles = { version = "0.54.0", features = ["bam"] }
 ```
 
 Each enabled feature can then be imported by its re-exported name, e.g.,

diff --git a/noodles-bam/CHANGELOG.md b/noodles-bam/CHANGELOG.md
@@ -1,5 +1,11 @@
 # Changelog
 
+## 0.48.0 - 2023-10-19
+
+### Changed
+
+  * bam: Sync dependencies.
+
 ## 0.47.0 - 2023-10-12
 
 ### Added

diff --git a/noodles-bam/Cargo.toml b/noodles-bam/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "noodles-bam"
-version = "0.47.0"
+version = "0.48.0"
 authors = ["Michael Macias <[email protected]>"]
 license.workspace = true
 edition.workspace = true
@@ -22,11 +22,11 @@ tokio = { workspace = true, optional = true, features = ["fs", "io-util"] }
 
 noodles-bgzf = { path = "../noodles-bgzf", version = "0.25.0" }
 noodles-core = { path = "../noodles-core", version = "0.12.0" }
-noodles-csi = { path = "../noodles-csi", version = "0.25.0" }
-noodles-sam = { path = "../noodles-sam", version = "0.44.0" }
+noodles-csi = { path = "../noodles-csi", version = "0.25.1" }
+noodles-sam = { path = "../noodles-sam", version = "0.45.0" }
 
 [dev-dependencies]
-noodles-sam = { path = "../noodles-sam", version = "0.44.0", features = ["async"] }
+noodles-sam = { path = "../noodles-sam", version = "0.45.0", features = ["async"] }
 tokio = { workspace = true, features = ["io-std", "macros", "rt-multi-thread"] }
 
 [package.metadata.docs.rs]

diff --git a/noodles-bcf/CHANGELOG.md b/noodles-bcf/CHANGELOG.md
@@ -1,5 +1,11 @@
 # Changelog
 
+## 0.39.0 - 2023-10-19
+
+### Changed
+
+  * bcf: Sync dependencies.
+
 ## 0.38.0 - 2023-10-12
 
 ### Changed

diff --git a/noodles-bcf/Cargo.toml b/noodles-bcf/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "noodles-bcf"
-version = "0.38.0"
+version = "0.39.0"
 authors = ["Michael Macias <[email protected]>"]
 license.workspace = true
 edition.workspace = true
@@ -18,8 +18,8 @@ byteorder.workspace = true
 indexmap.workspace = true
 noodles-bgzf = { path = "../noodles-bgzf", version = "0.25.0" }
 noodles-core = { path = "../noodles-core", version = "0.12.0" }
-noodles-csi = { path = "../noodles-csi", version = "0.25.0" }
-noodles-vcf = { path = "../noodles-vcf", version = "0.41.0" }
+noodles-csi = { path = "../noodles-csi", version = "0.25.1" }
+noodles-vcf = { path = "../noodles-vcf", version = "0.42.0" }
 
 futures = { workspace = true, optional = true, features = ["std"] }
 tokio = { workspace = true, optional = true, features = ["io-util"] }

diff --git a/noodles-cram/CHANGELOG.md b/noodles-cram/CHANGELOG.md
@@ -1,5 +1,11 @@
 # Changelog
 
+## 0.45.0 - 2023-10-19
+
+### Changed
+
+  * cram: Sync dependencies.
+
 ## 0.44.0 - 2023-10-12
 
 ### Changed

diff --git a/noodles-cram/Cargo.toml b/noodles-cram/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "noodles-cram"
-version = "0.44.0"
+version = "0.45.0"
 authors = ["Michael Macias <[email protected]>"]
 license.workspace = true
 edition.workspace = true
@@ -21,10 +21,10 @@ bytes.workspace = true
 bzip2 = "0.4.4"
 flate2.workspace = true
 md-5 = "0.10.0"
-noodles-bam = { path = "../noodles-bam", version = "0.47.0" }
+noodles-bam = { path = "../noodles-bam", version = "0.48.0" }
 noodles-core = { path = "../noodles-core", version = "0.12.0" }
 noodles-fasta = { path = "../noodles-fasta", version = "0.30.0" }
-noodles-sam = { path = "../noodles-sam", version = "0.44.0" }
+noodles-sam = { path = "../noodles-sam", version = "0.45.0" }
 xz2 = "0.1.6"
 
 async-compression = { version = "0.4.0", optional = true, features = ["gzip", "tokio"] }
@@ -35,7 +35,7 @@ tokio = { workspace = true, optional = true, features = ["fs", "io-util"] }
 libdeflater = { workspace = true, optional = true }
 
 [dev-dependencies]
-noodles-sam = { path = "../noodles-sam", version = "0.44.0", features = ["async"] }
+noodles-sam = { path = "../noodles-sam", version = "0.45.0", features = ["async"] }
 tokio = { workspace = true, features = ["io-std", "macros", "rt-multi-thread"] }
 
 [package.metadata.docs.rs]

diff --git a/noodles-csi/CHANGELOG.md b/noodles-csi/CHANGELOG.md
@@ -1,6 +1,6 @@
 # Changelog
 
-## Unreleased
+## 0.25.1 - 2023-10-19
 
 ### Fixed
 

diff --git a/noodles-csi/Cargo.toml b/noodles-csi/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "noodles-csi"
-version = "0.25.0"
+version = "0.25.1"
 authors = ["Michael Macias <[email protected]>"]
 license.workspace = true
 edition.workspace = true

diff --git a/noodles-gff/CHANGELOG.md b/noodles-gff/CHANGELOG.md
@@ -1,6 +1,6 @@
 # Changelog
 
-## Unreleased
+## 0.22.0 - 2023-10-19
 
 ### Added
 

diff --git a/noodles-gff/Cargo.toml b/noodles-gff/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "noodles-gff"
-version = "0.21.0"
+version = "0.22.0"
 authors = ["Michael Macias <[email protected]>"]
 license.workspace = true
 edition.workspace = true
@@ -14,5 +14,5 @@ documentation = "https://docs.rs/noodles-gff"
 indexmap.workspace = true
 noodles-bgzf = { path = "../noodles-bgzf", version = "0.25.0" }
 noodles-core = { path = "../noodles-core", version = "0.12.0" }
-noodles-csi = { path = "../noodles-csi", version = "0.25.0" }
+noodles-csi = { path = "../noodles-csi", version = "0.25.1" }
 percent-encoding.workspace = true
diff --git a/noodles-gtf/CHANGELOG.md b/noodles-gtf/CHANGELOG.md
@@ -1,5 +1,11 @@
 # Changelog
 
+## 0.18.0 - 2023-10-19
+
+### Changed
+
+  * gtf: Sync dependencies.
+
 ## 0.17.0 - 2023-10-12
 
 ### Changed

diff --git a/noodles-gtf/Cargo.toml b/noodles-gtf/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "noodles-gtf"
-version = "0.17.0"
+version = "0.18.0"
 authors = ["Michael Macias <[email protected]>"]
 license.workspace = true
 edition.workspace = true
@@ -13,4 +13,4 @@ documentation = "https://docs.rs/noodles-gtf"
 [dependencies]
 noodles-bgzf = { path = "../noodles-bgzf", version = "0.25.0" }
 noodles-core = { path = "../noodles-core", version = "0.12.0" }
-noodles-csi = { path = "../noodles-csi", version = "0.25.0" }
+noodles-csi = { path = "../noodles-csi", version = "0.25.1" }
diff --git a/noodles-sam/CHANGELOG.md b/noodles-sam/CHANGELOG.md
@@ -1,6 +1,6 @@
 # Changelog
 
-## Unreleased
+## 0.45.0 - 2023-10-19
 
 ### Added
 

diff --git a/noodles-sam/Cargo.toml b/noodles-sam/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "noodles-sam"
-version = "0.44.0"
+version = "0.45.0"
 authors = ["Michael Macias <[email protected]>"]
 license.workspace = true
 edition.workspace = true
@@ -20,7 +20,7 @@ lexical-core = "0.8.5"
 memchr.workspace = true
 noodles-bgzf = { path = "../noodles-bgzf", version = "0.25.0" }
 noodles-core = { path = "../noodles-core", version = "0.12.0" }
-noodles-csi = { path = "../noodles-csi", version = "0.25.0" }
+noodles-csi = { path = "../noodles-csi", version = "0.25.1" }
 
 futures = { workspace = true, optional = true, features = ["std"] }
 tokio = { workspace = true, optional = true, features = ["io-util"] }

diff --git a/noodles-tabix/CHANGELOG.md b/noodles-tabix/CHANGELOG.md
@@ -1,5 +1,11 @@
 # Changelog
 
+## 0.31.0 - 2023-10-19
+
+### Changed
+
+  * tabix: Sync dependencies.
+
 ## 0.30.0 - 2023-10-12
 
 ### Changed

diff --git a/noodles-tabix/Cargo.toml b/noodles-tabix/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "noodles-tabix"
-version = "0.30.0"
+version = "0.31.0"
 authors = ["Michael Macias <[email protected]>"]
 license.workspace = true
 edition.workspace = true
@@ -18,7 +18,7 @@ bit-vec.workspace = true
 byteorder.workspace = true
 noodles-bgzf = { path = "../noodles-bgzf", version = "0.25.0" }
 noodles-core = { path = "../noodles-core", version = "0.12.0" }
-noodles-csi = { path = "../noodles-csi", version = "0.25.0" }
+noodles-csi = { path = "../noodles-csi", version = "0.25.1" }
 
 tokio = { workspace = true, optional = true, features = ["fs", "io-util"] }
 

diff --git a/noodles-util/CHANGELOG.md b/noodles-util/CHANGELOG.md
@@ -1,5 +1,11 @@
 # Changelog
 
+## 0.26.0 - 2023-10-19
+
+### Changed
+
+  * util: Sync dependencies.
+
 ## 0.25.0 - 2023-10-12
 
 ### Changed

diff --git a/noodles-util/Cargo.toml b/noodles-util/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "noodles-util"
-version = "0.25.0"
+version = "0.26.0"
 authors = ["Michael Macias <[email protected]>"]
 license.workspace = true
 edition.workspace = true
@@ -30,15 +30,15 @@ variant = [
 
 [dependencies]
 flate2 = { workspace = true }
-noodles-bam = { path = "../noodles-bam", version = "0.47.0", optional = true }
-noodles-bcf = { path = "../noodles-bcf", version = "0.38.0", optional = true }
+noodles-bam = { path = "../noodles-bam", version = "0.48.0", optional = true }
+noodles-bcf = { path = "../noodles-bcf", version = "0.39.0", optional = true }
 noodles-bgzf = { path = "../noodles-bgzf", version = "0.25.0", optional = true }
 noodles-core = { path = "../noodles-core", version = "0.12.0", optional = true }
-noodles-cram = { path = "../noodles-cram", version = "0.44.0", optional = true }
-noodles-csi = { path = "../noodles-csi", version = "0.25.0", optional = true }
+noodles-cram = { path = "../noodles-cram", version = "0.45.0", optional = true }
+noodles-csi = { path = "../noodles-csi", version = "0.25.1", optional = true }
 noodles-fasta = { path = "../noodles-fasta", version = "0.30.0", optional = true }
-noodles-sam = { path = "../noodles-sam", version = "0.44.0", optional = true }
-noodles-vcf = { path = "../noodles-vcf", version = "0.41.0", optional = true }
+noodles-sam = { path = "../noodles-sam", version = "0.45.0", optional = true }
+noodles-vcf = { path = "../noodles-vcf", version = "0.42.0", optional = true }
 
 [package.metadata.docs.rs]
 all-features = true

diff --git a/noodles-vcf/CHANGELOG.md b/noodles-vcf/CHANGELOG.md
@@ -1,5 +1,11 @@
 # Changelog
 
+## 0.42.0 - 2023-10-19
+
+### Changed
+
+  * vcf: Sync dependencies.
+
 ## 0.41.0 - 2023-10-12
 
 ### Changed

diff --git a/noodles-vcf/Cargo.toml b/noodles-vcf/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "noodles-vcf"
-version = "0.41.0"
+version = "0.42.0"
 authors = ["Michael Macias <[email protected]>"]
 license.workspace = true
 edition.workspace = true
@@ -18,8 +18,8 @@ indexmap.workspace = true
 memchr.workspace = true
 noodles-bgzf = { path = "../noodles-bgzf", version = "0.25.0" }
 noodles-core = { path = "../noodles-core", version = "0.12.0" }
-noodles-csi = { path = "../noodles-csi", version = "0.25.0" }
-noodles-tabix = { path = "../noodles-tabix", version = "0.30.0" }
+noodles-csi = { path = "../noodles-csi", version = "0.25.1" }
+noodles-tabix = { path = "../noodles-tabix", version = "0.31.0" }
 percent-encoding.workspace = true
 
 futures = { workspace = true, optional = true, features = ["std"] }

diff --git a/noodles/CHANGELOG.md b/noodles/CHANGELOG.md
@@ -1,5 +1,18 @@
 # Changelog
 
+## 0.54.0 - 2023-10-19
+
+  * [noodles-bam 0.48.0](https://github.com/zaeleus/noodles/blob/noodles-bam-0.48.0/noodles-bam/CHANGELOG.md)
+  * [noodles-bcf 0.39.0](https://github.com/zaeleus/noodles/blob/noodles-bcf-0.39.0/noodles-bcf/CHANGELOG.md)
+  * [noodles-cram 0.45.0](https://github.com/zaeleus/noodles/blob/noodles-cram-0.45.0/noodles-cram/CHANGELOG.md)
+  * [noodles-csi 0.25.1](https://github.com/zaeleus/noodles/blob/noodles-csi-0.25.1/noodles-csi/CHANGELOG.md)
+  * [noodles-gff 0.22.0](https://github.com/zaeleus/noodles/blob/noodles-gff-0.22.0/noodles-gff/CHANGELOG.md)
+  * [noodles-gtf 0.18.0](https://github.com/zaeleus/noodles/blob/noodles-gtf-0.18.0/noodles-gtf/CHANGELOG.md)
+  * [noodles-sam 0.45.0](https://github.com/zaeleus/noodles/blob/noodles-sam-0.45.0/noodles-sam/CHANGELOG.md)
+  * [noodles-tabix 0.31.0](https://github.com/zaeleus/noodles/blob/noodles-tabix-0.31.0/noodles-tabix/CHANGELOG.md)
+  * [noodles-util 0.26.0](https://github.com/zaeleus/noodles/blob/noodles-util-0.26.0/noodles-util/CHANGELOG.md)
+  * [noodles-vcf 0.42.0](https://github.com/zaeleus/noodles/blob/noodles-vcf-0.42.0/noodles-vcf/CHANGELOG.md)
+
 ## 0.53.0 - 2023-10-12
 
   * [noodles-bam 0.47.0](https://github.com/zaeleus/noodles/blob/noodles-bam-0.47.0/noodles-bam/CHANGELOG.md)

diff --git a/noodles/Cargo.toml b/noodles/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "noodles"
-version = "0.53.0"
+version = "0.54.0"
 authors = ["Michael Macias <[email protected]>"]
 license.workspace = true
 edition.workspace = true
@@ -12,22 +12,22 @@ documentation = "https://docs.rs/noodles"
 readme = "../README.md"
 
 [dependencies]
-noodles-bam = { path = "../noodles-bam", version = "0.47.0", optional = true }
-noodles-bcf = { path = "../noodles-bcf", version = "0.38.0", optional = true }
+noodles-bam = { path = "../noodles-bam", version = "0.48.0", optional = true }
+noodles-bcf = { path = "../noodles-bcf", version = "0.39.0", optional = true }
 noodles-bed = { path = "../noodles-bed", version = "0.10.0", optional = true }
 noodles-bgzf = { path = "../noodles-bgzf", version = "0.25.0", optional = true }
 noodles-core = { path = "../noodles-core", version = "0.12.0", optional = true }
-noodles-cram = { path = "../noodles-cram", version = "0.44.0", optional = true }
-noodles-csi = { path = "../noodles-csi", version = "0.25.0", optional = true }
+noodles-cram = { path = "../noodles-cram", version = "0.45.0", optional = true }
+noodles-csi = { path = "../noodles-csi", version = "0.25.1", optional = true }
 noodles-fasta = { path = "../noodles-fasta", version = "0.30.0", optional = true }
 noodles-fastq = { path = "../noodles-fastq", version = "0.9.0", optional = true }
-noodles-gff = { path = "../noodles-gff", version = "0.21.0", optional = true }
-noodles-gtf = { path = "../noodles-gtf", version = "0.17.0", optional = true }
+noodles-gff = { path = "../noodles-gff", version = "0.22.0", optional = true }
+noodles-gtf = { path = "../noodles-gtf", version = "0.18.0", optional = true }
 noodles-htsget = { path = "../noodles-htsget", version = "0.2.0", optional = true }
 noodles-refget = { path = "../noodles-refget", version = "0.1.0", optional = true }
-noodles-sam = { path = "../noodles-sam", version = "0.44.0", optional = true }
-noodles-tabix = { path = "../noodles-tabix", version = "0.30.0", optional = true }
-noodles-vcf = { path = "../noodles-vcf", version = "0.41.0", optional = true }
+noodles-sam = { path = "../noodles-sam", version = "0.45.0", optional = true }
+noodles-tabix = { path = "../noodles-tabix", version = "0.31.0", optional = true }
+noodles-vcf = { path = "../noodles-vcf", version = "0.42.0", optional = true }
 
 [features]
 default = []