Add TICA, max/min distance calc, and data projection commands

doc/cpptraj.bib

@@ -444,3 +444,29 @@ @article{Roe2022a
 title = {{ Quantifying the Effects of Lossy Compression on Energies Calculated from Molecular Dynamics Trajectories}},
 year = {2022}
 }
+
+@article{Perez2013,
+author = {P{\'e}rez-Hern{\'a}ndez, Guillermo and Paul, Fabian and Giorgino, Toni and De Fabritiis, Gianni and No{\'e}, Frank},
+    title = "{Identification of slow molecular order parameters for Markov model construction}",
+    journal = {The Journal of Chemical Physics},
+    volume = {139},
+    number = {1},
+    pages = {015102},
+    year = {2013},
+    month = {07},
+    issn = {0021-9606},
+    doi = {10.1063/1.4811489},
+    url = {https://doi.org/10.1063/1.4811489},
+}
+
+@article{Noe2016,
+author = {No{\'e}, Frank and Banisch, Ralf and Clementi, Cecilia},
+title = {Commute Maps: Separating Slowly Mixing Molecular Configurations for Kinetic Modeling},
+journal = {Journal of Chemical Theory and Computation},
+volume = {12},
+number = {11},
+pages = {5620-5630},
+year = {2016},
+doi = {10.1021/acs.jctc.6b00762},
+URL = { https://doi.org/10.1021/acs.jctc.6b00762 },
+}