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Chemprot dataset [WIP] #137

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wants to merge 19 commits into from
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Chemprot dataset [WIP] #137

wants to merge 19 commits into from

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kai-car
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@kai-car kai-car commented Jul 16, 2024

Created loading script chemprot.py for ChemProt dataset available on Hugging Face bigbio/chemprot and associated test script test_chemprot.py. Currently all tests run successfully. However, still working on completion.

Finally, this will include:

  • requirements.txt
  • test HF dataset
  • document type
  • HF example <-> document
  • test HF example <-> document
  • test PIE dataset
  • document converts
  • test document converters
  • README.md

@kai-car kai-car requested a review from ArneBinder July 16, 2024 14:53
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codecov bot commented Jul 16, 2024

Codecov Report

Attention: Patch coverage is 88.54962% with 15 lines in your changes missing coverage. Please review.

Project coverage is 88.54%. Comparing base (bc35e02) to head (4184686).
Report is 1 commits behind head on main.

Files Patch % Lines
dataset_builders/pie/chemprot/chemprot.py 80.59% 13 Missing ⚠️
dataset_builders/pie/biorel/biorel.py 96.87% 2 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #137      +/-   ##
==========================================
- Coverage   91.40%   88.54%   -2.86%     
==========================================
  Files          10        2       -8     
  Lines         814      131     -683     
==========================================
- Hits          744      116     -628     
+ Misses         70       15      -55     

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@kai-car kai-car closed this Jul 16, 2024
@kai-car kai-car deleted the chemprot-dataset branch July 16, 2024 15:27
@kai-car kai-car mentioned this pull request Jul 16, 2024
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