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@TheDeanLab

Dean Lab

The Dean Lab at the University of Texas Southwestern

Dean Lab

Mission

The Dean Lab is dedicated to the development and application of advanced microscopy instrumentation and analysis techniques. Our goal is to unravel complex biological problems that have remained elusive. As part of the National Cancer Institute Cellular Cancer Biology Imaging Research Center, we engage in dynamic collaborations with leading scientists to create scalable solutions, enhancing our understanding of early metastatic colonization events.

Collaborations

Our key collaborators include:

  • Dr. Gaudenz Danuser (UT Southwestern Medical Center)
  • Dr. Reto Fiolka (UT Southwestern Medical Center)
  • Dr. Sean Morrison (UT Southwestern Medical Center)
  • Dr. Jim Amatruda (University of Southern California)
  • Dr. Peter Sorger (Harvard Medical School)

Research and Development

As part of the National Institutes of General Medical Sciences Biomedical Technology Development and Dissemination Center, our lab, in collaboration with Drs. Klaus Hahn and Gaudenz Danuser, focuses on making advanced optical probes, light-sheet microscopes, and time-series analysis software accessible to a diverse international user base.

Impact and Outreach

Our collaborative efforts at UT Southwestern Medical Center bridge the gap between basic and clinical sciences, significantly enhancing our understanding of clinically relevant biological processes. We are committed to fostering a collaborative ecosystem where advances in microscopy not only provide answers to existing biological questions but also inspire new inquiries and drive the development of innovative imaging techniques tailored to biological research.

Location

The Dean Lab is part of the Cecil H. and Ida Green Department of Systems Biology, and the Lyda Hill Department of Bioinformatics at UT Southwestern Medical Center.

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  1. navigate navigate Public

    navigate - open source light-sheet microscope controls

    Python 33 7

Repositories

Showing 10 of 14 repositories
  • navigate Public

    navigate - open source light-sheet microscope controls

    TheDeanLab/navigate’s past year of commit activity
    Python 33 7 37 1 Updated Dec 23, 2024
  • navigate-at-scale Public

    A navigate plugin for high-throughput microscopy.

    TheDeanLab/navigate-at-scale’s past year of commit activity
    C 1 MIT 1 4 1 Updated Nov 8, 2024
  • TheDeanLab/Intro-to-Python-2024’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Oct 31, 2024
  • TheDeanLab/navigate-hardware’s past year of commit activity
    0 0 1 0 Updated Oct 9, 2024
  • navigate-photoactivation Public

    A plugin that enables event-driven photoactivation routines with navigate.

    TheDeanLab/navigate-photoactivation’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 20, 2024
  • navigate-constant-velocity-acquisition Public

    A navigate plugin for constant velocity imaging.

    TheDeanLab/navigate-constant-velocity-acquisition’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Aug 30, 2024
  • navigate-confocal-projection Public

    Confocal Projection Plugin

    TheDeanLab/navigate-confocal-projection’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Aug 30, 2024
  • navigate-mmcore-plugin Public

    A plugin for seamless integration of Micro-Manager devices with navigate, enhancing light-sheet microscopy control.

    TheDeanLab/navigate-mmcore-plugin’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Aug 12, 2024
  • navigate-plugin-template Public template

    A forkable template for navigate plugins.

    TheDeanLab/navigate-plugin-template’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Aug 9, 2024
  • TheDeanLab/thedeanlab.github.io’s past year of commit activity
    JavaScript 0 0 0 0 Updated May 10, 2024

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