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188 Open 78 Closed
188 Open 78 Closed
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Issues list

Replace sequential PubMed load with a parallel process
#379 opened Dec 12, 2024 by gaurav
Add conflation information to the DuckDB databases
#378 opened Dec 10, 2024 by gaurav
Publish source code to Zenodo for long-term archiving
#376 opened Dec 4, 2024 by gaurav
Add support for overriding the default prefix order used to choose the preferred identifier
#375 opened Dec 2, 2024 by gaurav
1
Export SSSOM intermediate files with information on the type of provenance, not just the provenance itself
#374 opened Dec 2, 2024 by gaurav
Export explanations for cliques as an intermediate output directly from the intermediate files
#373 opened Dec 2, 2024 by gaurav
1
Add support for CURIE/URI normalization
#372 opened Dec 2, 2024 by gaurav
1
2024oct24 defaults UMLS IDs to proteins rather than chemical entities
#370 opened Nov 5, 2024 by gaurav Babel November 2024
Some MONDO cliques are unexpectedly not cliqued with other identifiers
#369 opened Nov 4, 2024 by gaurav Babel November 2024
@cbizon
2
Add support for better combination of child UMLS identifiers
#368 opened Nov 4, 2024 by gaurav Issues needing investigation
Multiple cliques for ritodrine?
#367 opened Oct 23, 2024 by cbizon
1
Set up a namespace on Sterling specifically for Babel
#366 opened Oct 21, 2024 by gaurav Babel November 2024
MESH:C053590 (quinquefolan B) is combined with CHEBI:16335 (adenosine)
#364 opened Oct 18, 2024 by gaurav Issues needing investigation
1
Improve prefix checking
#359 opened Oct 16, 2024 by gaurav Babel November 2024
3
ICD-11 Mappings
#357 opened Oct 10, 2024 by beasleyjonm Babel November 2024
2
Number of GeneProtein conflations and fell in 2024oct1
#355 opened Oct 4, 2024 by gaurav Issues needing investigation
1
Issues with NameResolver identifying Simoctocog Alfa
#354 opened Oct 4, 2024 by marcello-deluca Babel November 2024
7
Improve Babel CPU and memory configuration on Sterling
#353 opened Oct 2, 2024 by gaurav Babel November 2024
Improve PubMed download
#352 opened Oct 1, 2024 by gaurav Babel November 2024
Missing gene connection with UMLS because we don't include NCIT mappings Data Source: UMLS and RxNorm
#350 opened Sep 26, 2024 by gaurav Babel November 2024
1
Check Drug.txt to ensure that we don't have small molecules in there
#348 opened Sep 23, 2024 by gaurav Babel November 2024
Should bivalirudin and bivalirudin trifluoroacetate be cliqued together? split clique
#346 opened Sep 11, 2024 by gaurav Babel November 2024
NCBIGenes missing primary label
#345 opened Sep 10, 2024 by gaurav Babel November 2024
Brand name "Estrostep Fe" not tied to the underlying PubChem
#344 opened Sep 10, 2024 by gaurav Babel November 2024
Xylitol - split clique split clique
#343 opened Sep 9, 2024 by gaurav Babel November 2024
ProTip! Follow long discussions with comments:>50.