Update README.md

README.md

@@ -8,4 +8,25 @@ The orchestrateSpecies.sh is starting various R scripts for
 * modelling (modelling.r)
 * predicting (prediction.r)
 * evaluating for Natura 2000 areas (compare.r)
-* 
+
+
+## Spatial blocking
+* uncomment blockSeparation.r in orchestrateSpecies.sh
+* run ```bash orchestrateSpecies.sh``` in terminal
+
+## Modelling
+* Change model accroding to the one you want to run in orchestrateSpecies.sh
+* uncomment modelling.r
+* run ```bash orchestrateSpecies.sh``` in terminal
+
+## Prediction
+* uncomment prediction.r in orchestrateSpecies.sh
+* run ```bash orchestrateSpecies.sh``` in terminal
+
+## Evaluating species dstribution changes for Natura 2000 sites
+* uncomment compare.r in orchestrateSpecies.sh
+* keep "ABC" or change to either or if you want to evaluate for only Birds (A) or Habitats Directive (B) or both (C) areas
+* run ```bash orchestrateSpecies.sh``` in terminal
+
+
+In all codes the paths are changed. So please chnage paths in all files according to your preferences.