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Releases: cnag-aat/FOAM

v0.5

25 Oct 13:16
72ec402
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Changes since v0.2:

  • "filter_ont_max_len" rule filter out reads longer than the cutoff length (for example: mitogenome+-2kb)

  • polish with flye once after assembly, then annotate&rotate, and then polish once with long reads.

  • added a new param for flye flye_reads to be especify the readtype in the config.yaml

v0.2

25 Oct 08:47
3ec80dc
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v0.2 changes:

  • uses relative path to the scripts, modules and utils
  • added a rule to rotate the reference genome to ensure also starts at the trnF gene (good for qc alignments)