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fix: bump rasterio and correctly reproject ukcp18 2.2km #17

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Sep 10, 2024
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2 changes: 1 addition & 1 deletion hazard_workflow.cwl
Original file line number Diff line number Diff line change
Expand Up @@ -92,7 +92,7 @@ $graph:

hints:
DockerRequirement:
dockerPull: public.ecr.aws/c9k5s3u3/os-hazard-indicator:0155a34
dockerPull: public.ecr.aws/c9k5s3u3/os-hazard-indicator:cb86f35

requirements:
ResourceRequirement:
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115 changes: 76 additions & 39 deletions notebooks/ukcp18_hazard_DaysTasAboveIndicator.ipynb

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94 changes: 14 additions & 80 deletions pdm.lock

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

2 changes: 1 addition & 1 deletion pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -46,7 +46,7 @@ dependencies = [
"pystac>=1.10.0,<2.0.0",
"pystac-client>=0.7.6,<1.0.0",
"pymdown-extensions>=10.7.1,<11.0.0",
"rasterio>=1.3.9,<2.0.0",
"rasterio>=1.4b1,<2.0.0",
"rioxarray>=0.13.4,<1.0.0",
"seaborn>=0.13.2,<1.0.0",
"shapely>=2.0.3,<3.0.0",
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60 changes: 50 additions & 10 deletions src/hazard/sources/ukcp18.py
Original file line number Diff line number Diff line change
Expand Up @@ -6,9 +6,13 @@
from typing import Dict, Generator, List, Optional, Tuple, Union

import fsspec
import numpy as np
import rasterio
import rasterio.crs
import rasterio.warp
import xarray as xr
from rasterio import CRS
from rioxarray.rioxarray import affine_to_coords

from hazard.protocols import OpenDataset

Expand Down Expand Up @@ -142,6 +146,50 @@ def _reproject_and_rename_coordinates(
reprojected = data_array.rio.reproject(target_crs)
return reprojected.rename({to_rename_to_lon: "lon", to_rename_to_lat: "lat"})

def _process_2_2km_rotated_poles_data(
self, data_array: xr.DataArray
) -> xr.DataArray:
lon2d = data_array["longitude"].values
lat2d = data_array["latitude"].values
source = data_array.isel(ensemble_member=0).values
wgs84 = rasterio.crs.CRS.from_epsg(4326)

src_height, src_width = lon2d.shape
dst_transform, dst_width, dst_height = (
rasterio.warp.calculate_default_transform(
src_crs=wgs84,
dst_crs=wgs84,
width=src_width,
height=src_height,
src_geoloc_array=(lon2d, lat2d),
)
)

destination = np.full((len(source), dst_height, dst_width), np.nan)

data, transform = rasterio.warp.reproject(
source,
destination=destination,
src_crs=wgs84,
dst_crs=wgs84,
dst_transform=dst_transform,
dst_nodata=np.nan,
src_geoloc_array=np.stack((lon2d, lat2d)),
)

coords = affine_to_coords(
transform, width=dst_width, height=dst_height, x_dim="x", y_dim="y"
)
coords.update(time=data_array["time"].values)

filtered_attributes = data_array.attrs.copy()
filtered_attributes.pop("grid_mapping", None)

data_array_reprojected = xr.DataArray(
data, coords=coords, dims=("time", "y", "x"), attrs=filtered_attributes
)
return data_array_reprojected.rename({"x": "lon", "y": "lat"})

def _reproject_quantity(
self, dataset: xr.Dataset, quantity: str, crs: rasterio.CRS
) -> xr.Dataset:
Expand All @@ -155,16 +203,8 @@ def _reproject_quantity(
prepped_data_array, _WGS84, "x", "y"
)
elif self._domain == "uk" and self._resolution == "2.2km":
prepped_data_array = self._prepare_data_array(
dataset[quantity],
crs,
drop_vars=["latitude", "longitude"],
)
prepped_data_array.rio.set_spatial_dims(
"grid_longitude", "grid_latitude", inplace=True
)
dataset[quantity] = self._reproject_and_rename_coordinates(
prepped_data_array, _WGS84, "x", "y"
dataset[quantity] = self._process_2_2km_rotated_poles_data(
dataset[quantity]
)
elif self._domain == "eur" and self._resolution == "12km":
prepped_data_array = self._prepare_data_array(
Expand Down
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