test: bioimage.io core prediction functional #42
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| name: Docs Build and Publish | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - qy/unify-prediction | |
| permissions: | |
| contents: write | |
| jobs: | |
| deploy-docs: | |
| runs-on: ubuntu-latest | |
| env: | |
| DISPLAY: ":99.0" | |
| steps: | |
| # Checkout the repository | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| # Set up Qt libraries (required for PyQt applications) | |
| - name: Set Up Qt Libraries | |
| uses: tlambert03/setup-qt-libs@v1 | |
| # Start X virtual framebuffer for GUI testing | |
| - name: Start Xvfb | |
| run: | | |
| /sbin/start-stop-daemon --start --quiet --pidfile /tmp/custom_xvfb_99.pid \ | |
| --make-pidfile --background --exec /usr/bin/Xvfb -- :99 -screen 0 1920x1200x24 -ac +extension GLX | |
| # Set the documentation release version | |
| - name: Set Documentation Version | |
| run: echo "RELEASE_VERSION=DOC_RELEASE" >> $GITHUB_ENV | |
| # Print the documentation version name (for debugging purposes) | |
| - name: Print Documentation Version | |
| run: echo $RELEASE_VERSION | |
| # Configure Git credentials for deployment | |
| - name: Configure Git Credentials | |
| run: | | |
| git config user.name "github-actions[bot]" | |
| git config user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
| # Set up Miniconda | |
| - name: Set Up Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-activate-base: true | |
| activate-environment: "" | |
| channels: local,conda-forge,defaults | |
| channel-priority: false | |
| # Display available Conda environments (for debugging purposes) | |
| - name: List Conda Environments | |
| shell: bash -l {0} | |
| run: conda info --envs | |
| # Build the PlantSeg Conda package (for screenshots in documentation) | |
| - name: Build PlantSeg Package | |
| shell: bash -l {0} | |
| run: | | |
| conda install -q conda-build | |
| conda build -c conda-forge conda-recipe | |
| # Create a Conda environment for PlantSeg | |
| - name: Create PlantSeg Environment | |
| run: | | |
| conda create -n plant-seg -c local -c conda-forge pyqt plantseg | |
| # Activate the PlantSeg environment | |
| - name: Activate PlantSeg Environment | |
| shell: bash -l {0} | |
| run: conda activate plant-seg | |
| # Set a cache ID based on the current UTC week number | |
| - name: Set Cache ID | |
| run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV | |
| # Cache MkDocs build artifacts | |
| - name: Cache MkDocs Artifacts | |
| uses: actions/cache@v4 | |
| with: | |
| key: mkdocs-material-${{ env.cache_id }} | |
| path: .cache | |
| restore-keys: | | |
| mkdocs-material- | |
| # Install MkDocs and deploy the documentation to GitHub Pages | |
| - name: Install MkDocs and Deploy | |
| shell: bash -l {0} | |
| run: | | |
| conda activate plant-seg | |
| pip install mkdocs-material \ | |
| mkdocs-git-revision-date-localized-plugin \ | |
| mkdocs-git-committers-plugin-2 \ | |
| mkdocs-autorefs \ | |
| mkdocstrings[python] \ | |
| markdown-exec | |
| mkdocs gh-deploy --force | |
| env: | |
| MKDOCS_GIT_COMMITTERS_APIKEY: ${{ secrets.MKDOCS_GIT_COMMITTERS_APIKEY }} |