test: bioimage.io core prediction task #43
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Docs Build and Publish | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - qy/unify-prediction | |
| permissions: | |
| contents: write | |
| jobs: | |
| deploy-docs: | |
| runs-on: ubuntu-latest | |
| env: | |
| DISPLAY: ":99.0" | |
| steps: | |
| # Checkout the repository | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| # Set up Qt libraries (required for PyQt applications) | |
| - name: Set Up Qt Libraries | |
| uses: tlambert03/setup-qt-libs@v1 | |
| # Start X virtual framebuffer for GUI testing | |
| - name: Start Xvfb | |
| run: | | |
| /sbin/start-stop-daemon --start --quiet --pidfile /tmp/custom_xvfb_99.pid \ | |
| --make-pidfile --background --exec /usr/bin/Xvfb -- :99 -screen 0 1920x1200x24 -ac +extension GLX | |
| # Set the documentation release version | |
| - name: Set Documentation Version | |
| run: echo "RELEASE_VERSION=DOC_RELEASE" >> $GITHUB_ENV | |
| # Print the documentation version name (for debugging purposes) | |
| - name: Print Documentation Version | |
| run: echo $RELEASE_VERSION | |
| # Configure Git credentials for deployment | |
| - name: Configure Git Credentials | |
| run: | | |
| git config user.name "github-actions[bot]" | |
| git config user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
| # Set up Miniconda | |
| - name: Set Up Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-activate-base: true | |
| activate-environment: "" | |
| channels: local,conda-forge,defaults | |
| channel-priority: false | |
| # Display available Conda environments (for debugging purposes) | |
| - name: List Conda Environments | |
| shell: bash -l {0} | |
| run: conda info --envs | |
| # Build the PlantSeg Conda package (for screenshots in documentation) | |
| - name: Build PlantSeg Package | |
| shell: bash -l {0} | |
| run: | | |
| conda install -q conda-build | |
| conda build -c conda-forge conda-recipe | |
| # Create a Conda environment for PlantSeg | |
| - name: Create PlantSeg Environment | |
| run: | | |
| conda create -n plant-seg -c local -c conda-forge pyqt plantseg | |
| # Activate the PlantSeg environment | |
| - name: Activate PlantSeg Environment | |
| shell: bash -l {0} | |
| run: conda activate plant-seg | |
| # Set a cache ID based on the current UTC week number | |
| - name: Set Cache ID | |
| run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV | |
| # Cache MkDocs build artifacts | |
| - name: Cache MkDocs Artifacts | |
| uses: actions/cache@v4 | |
| with: | |
| key: mkdocs-material-${{ env.cache_id }} | |
| path: .cache | |
| restore-keys: | | |
| mkdocs-material- | |
| # Install MkDocs and deploy the documentation to GitHub Pages | |
| - name: Install MkDocs and Deploy | |
| shell: bash -l {0} | |
| run: | | |
| conda activate plant-seg | |
| pip install mkdocs-material \ | |
| mkdocs-git-revision-date-localized-plugin \ | |
| mkdocs-git-committers-plugin-2 \ | |
| mkdocs-autorefs \ | |
| mkdocstrings[python] \ | |
| markdown-exec | |
| mkdocs gh-deploy --force | |
| env: | |
| MKDOCS_GIT_COMMITTERS_APIKEY: ${{ secrets.MKDOCS_GIT_COMMITTERS_APIKEY }} |