Merge pull request #338 from kreshuklab/qy/unify-prediction #118
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| name: Conda Build and Test | |
| on: [push] | |
| jobs: | |
| build-and-test-linux: | |
| runs-on: ubuntu-latest | |
| env: | |
| DISPLAY: ":99.0" | |
| steps: | |
| # Checkout the repository | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| # Set up Qt libraries (required for PyQt applications) | |
| - name: Set Up Qt Libraries | |
| uses: tlambert03/setup-qt-libs@v1 | |
| # Start X virtual framebuffer for GUI testing | |
| - name: Start Xvfb | |
| run: | | |
| /sbin/start-stop-daemon --start --quiet --pidfile /tmp/custom_xvfb_99.pid \ | |
| --make-pidfile --background --exec /usr/bin/Xvfb -- :99 -screen 0 1920x1200x24 -ac +extension GLX | |
| # Set the PlantSeg version based on the current date and time | |
| - name: Set PlantSeg Version | |
| run: echo "RELEASE_VERSION=$(date +%Y%m%d%H%M%S)" >> $GITHUB_ENV | |
| # Print the PlantSeg version name (for debugging purposes) | |
| - name: Print PlantSeg Version | |
| run: echo $RELEASE_VERSION | |
| # Set up Miniconda | |
| - name: Set Up Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-activate-base: true | |
| activate-environment: "" | |
| channels: local,conda-forge,defaults | |
| channel-priority: false | |
| # Display available Conda environments (for debugging purposes) | |
| - name: List Conda Environments | |
| shell: bash -l {0} | |
| run: conda info --envs | |
| # Build the PlantSeg Conda package | |
| - name: Build PlantSeg Package | |
| shell: bash -l {0} | |
| run: | | |
| conda install -q conda-build | |
| conda build -c conda-forge conda-recipe | |
| # Create a Conda environment for testing | |
| - name: Create PlantSeg Test Environment | |
| run: | | |
| conda create -n plant-seg -c local -c conda-forge plantseg pytest pytest-qt pytest-cov pytest-mock requests-mock | |
| # Run tests using pytest | |
| - name: Run Tests with Pytest | |
| shell: bash -l {0} | |
| run: | | |
| conda activate plant-seg | |
| pytest -s --cov --cov-report=xml | |
| conda deactivate | |
| # Upload Codecov report | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/[email protected] | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |