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Gingr v1.3

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@ondovb ondovb released this 03 Oct 23:02
· 1 commit to master since this release
v1.3
7e8f420

New features

  • VCF annotations - When annotations are loaded, there are new INFO fields in VCF output indicating what CDS locus, if any, each variant lies in, the amino acid changes for each allele, and whether all alleles are synonymous.
  • Clade internal variants - Right click on a tree clade to export a VCF with only positions that differ within the clade (columns will be restricted to genomes in the clade).
  • Clade signature variants - Right click on a tree clade to export a VCF with only positions that are consistent within the clade and different outside of it (all columns will be included).
  • Top level zoom - Return the tree and alignment to their original zoom levels from the View menu or with [CMD/CTRL]+T.

Changes

  • GenBank annotations are now reconciled with fasta reference sequences using accessions rather than GIs, due to the retirement of GIs by NCBI.
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