corrected name clash control in stub as well

nf-core · Dec 18, 2024 · 540bec9 · 540bec9
1 parent 0bd2532
commit 540bec9
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Showing 2 changed files with 2 additions and 74 deletions.
diff --git a/modules/nf-core/gzrt/main.nf b/modules/nf-core/gzrt/main.nf
@@ -23,7 +23,7 @@ process GZRT {
     }
 
     prefix = task.ext.prefix ?: "${meta.id}_recovered"
-    if ("${fastqgz}" == "${prefix}.fastq.gz") error "Input and output names are the same, set prefix in module configuration to disambiguate!"
+    if ("${fastqgz}" == "${prefix}.fastq.gz") error "Input and output names are the same, use \"task.ext.prefix\" to disambiguate!"
     """
     gzrecover -p ${fastqgz} | gzip > ${prefix}.fastq.gz
 
@@ -37,7 +37,7 @@ process GZRT {
 
     stub:
     prefix = task.ext.prefix ?: "${meta.id}_recovered"
-    if ("${fastqgz}" == "${prefix}.fastq.gz") error "Input and output names are the same, set prefix in module configuration to disambiguate!"
+    if ("${fastqgz}" == "${prefix}.fastq.gz") error "Input and output names are the same, use \"task.ext.prefix\" to disambiguate!"
     """
     echo "" | gzip > ${prefix}.fastq.gz
 

diff --git a/modules/nf-core/gzrt/tests/main.nf.test.snap b/modules/nf-core/gzrt/tests/main.nf.test.snap