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    18 repositories

    • plasmidID

      Public
      PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
      Shell
      •
      GNU General Public License v3.0
      •8•0•0•0•Updated Apr 23, 2019Apr 23, 2019

    • srst2

      Public
      Short Read Sequence Typing for Bacterial Pathogens
      Python
      •
      Other
      •66•0•0•0•Updated Mar 25, 2019Mar 25, 2019

    • MGmapper

      Public
      Python
      •0•0•1•0•Updated Mar 22, 2019Mar 22, 2019

    • dockers

      Public
      Dockerfile
      •1•0•0•0•Updated Nov 6, 2018Nov 6, 2018

    • ottotype

      Public
      Shell
      •2•0•0•0•Updated Nov 6, 2018Nov 6, 2018

    • FastViromeExplorer

      Public
      FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer
      Java
      •
      BSD 2-Clause "Simplified" License
      •2•0•0•0•Updated Sep 24, 2018Sep 24, 2018

    • qiime-deploy

      Public
      Tool to easily install QIIME's dependencies on Linux systems
      Python
      •32•0•0•0•Updated Aug 15, 2018Aug 15, 2018

    • qiime-deploy-conf

      Public
      configuration files to be used with the qiime-deploy packages
      28•0•0•0•Updated Aug 15, 2018Aug 15, 2018

    • KmerFinder

      Public
      Python
      •0•0•0•0•Updated Jul 4, 2018Jul 4, 2018

    • WGS-Outbreaker

      Public
      Pipeline for whole genome sequencing analysis for outbreak detection and characterization of foodborne bacteria
      Shell
      •2•0•0•0•Updated Apr 20, 2018Apr 20, 2018

    • config

      Public
      Shell
      •0•0•0•0•Updated Mar 1, 2018Mar 1, 2018

    • SeqSero

      Public
      Salmonella serotyping from genome sequencing data
      Python
      •
      GNU General Public License v2.0
      •12•0•0•0•Updated Jan 5, 2018Jan 5, 2018

    • bin

      Public
      Python
      •0•0•0•0•Updated Dec 26, 2017Dec 26, 2017

    • SalmID

      Public
      Rapid confirmation of Salmonella spp. and subspp. from sequence data
      Python
      •
      MIT License
      •4•0•0•0•Updated Oct 2, 2017Oct 2, 2017

    • LisSero

      Public
      In silico serotype prediction for Listeria monocytogenes
      Python
      •
      GNU General Public License v2.0
      •9•0•0•0•Updated Sep 25, 2017Sep 25, 2017

    • utils

      Public
      Perl
      •0•0•0•0•Updated Aug 12, 2017Aug 12, 2017

    • backup

      Public
      0•0•0•0•Updated Aug 11, 2017Aug 11, 2017

    • fastqcheck

      Public
      Generate statistics on and validate fastq files
      C
      •
      Other
      •6•0•0•0•Updated Nov 8, 2016Nov 8, 2016