slideDirectory

slideDirectory provides a flexible way to create staging directories per slide, making it suitable for batch processing of files in a parallelized manner.

Example usage:

./slideDirectory --file AE1234.SR.ndpi

Argument(s):

-f, --file
- Provide a single WSI or list of WSIs. Required.

Optional argument(s):

-v, --version
- Display version and license information. Optional.
-h, --help
- Show this help message and exit. Optional.

^{Licence. The MIT License (MIT): http://opensource.org/licenses/MIT.}

slideQuantify v1

slideQuantify_v1
slideQuantify_v1_1_expresshist_mask.sh
slideQuantify_v1_2_expresshist_tile.sh
slideQuantify_v1_3_tile_normalizing.sh
slideQuantify_v1_4_cellprofiler.sh
slideQuantify_v1_5_wrapup.sh