slideEntropySegmentation

Usage Overview:
This script, named slideEntropySegmentation, utilizes EntropyMasker to generate a mask for a given whole-slide image (WSI). The resulting mask is saved in the specified masking directory.

Usage:

python slideEntropySegmentation.py --input_img <path_to_input_image> --masks_dir <path_to_masks_directory>

Replace <path_to_input_image> with the path to your input image (should be a .ndpi or .tif file) and <path_to_masks_directory> with the directory where you want to save the generated mask image.

Arguments:

• --input_img
  • Description: Specify the path to the input image (NDPI or TIF format).
  • Required: Yes
• --masks_dir
  • Description: Specify the path to the directory where the generated mask image will be saved.
  • Required: Yes

Version Information:
This script is version 1.0.0 of slideEntropySegmentation, last updated on 2024-01-019. It is developed by Tim S. Peters and Sander W. van der Laan. The script is provided under the MIT License, allowing users to modify, distribute, and use the software freely, subject to certain conditions. For more details, refer to the license text provided within the script or visit http://opensource.org/.