Code

2.5.61#1704

Code

Merged

spond merged 28 commits intomasterveg/hyphy:masterfrom developveg/hyphy:developCopy head branch name to clipboardMay 1, 2024

+730-253

Commits

Commits on Mar 7, 2024

• HBL updates

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  0d4e363

• RELAX init conditions when unclassified is present

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  917c2a9

Commits on Mar 8, 2024

• MSS related scaling updates and support functions

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  b2e918c

• Merge remote-tracking branch 'refs/remotes/origin/develop' into develop

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  51344f3

• Fix for 0 weights

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  114318e

• Merge remote-tracking branch 'refs/remotes/origin/develop' into develop

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  12d007a

• Working on improving large set constraint performance

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  8dc8dd5

• MSS-joint

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  8a1166d

• Merge remote-tracking branch 'refs/remotes/origin/develop' into develop

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  68fcd05

Commits on Mar 11, 2024

• HBL tweaks

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  7cbfc6f

Commits on Mar 12, 2024

• Alignment fixes

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  a1c7b33

• Adding ORF detection

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  51d3e8e

Commits on Mar 13, 2024

• Alignment.cpp fixes

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  7e19993

• MSS Syn REV Codon rescale

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  9f82638

Commits on Mar 19, 2024

• Fixes for auto-renaming issues skipping through checks

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  b18f305

• Merge remote-tracking branch 'refs/remotes/origin/develop' into develop

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  a153a0d

• fixing iterating over numbers is shared_load_file

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  4735225

Commits on Mar 21, 2024

• MSS joint fit

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  69e197a

Commits on Apr 3, 2024

• Fixing the zero mean edge case for initial guessing in BUSTED and RELAX

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  7c27b0c

• Merge remote-tracking branch 'refs/remotes/origin/develop' into develop

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  9485534

Commits on Apr 8, 2024

• Merge remote-tracking branch 'origin' into develop

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  f0ccc43

Commits on Apr 12, 2024

• Fixing BUSTED-E initial conditions

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  2e65940

Commits on Apr 19, 2024

• BUSTED IC tweaks

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  c963eab

Commits on Apr 23, 2024

• Convergence tweaks

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  2065f1a

Commits on May 1, 2024

• Commenting out some developmental features

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  d294a9f

• Commenting out some developmental features

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  dc41521

• Commenting out some developmental features

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  fc23875

• Merge branch 'develop' of https://github.com/veg/hyphy into develop

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  committed
  b4f0263