contigtax v0.5.10

Changelog:

Bugfixes

• Handle a bug that can result from taxids having duplicate ranks (see #11)

Minor changes

• Catch error from no taxonomic entries matched to database
• Bump minimum python version
• Update name in Dockerfile

contigtax v0.5.9

Rename tango -> contigtax

Version 0.5.8

Changelog

• Resolves problems with UniRef databases where entries without taxids caused downstream problems for diamond makedb.
• Check diamond versions to make sure taxids are supported
• Fixed bug when input files were present in same directory

Version 0.5.7

This version fixes a bug where the program crashed because of non-unique categorical values passed to pandas.

Version 0.5.6

This version fixes a bug with filtering of sequences by length.

Version 0.5.5

Version 0.5.5 of tango

Version 0.5.4

Bugfix to propagate taxa and speedup by using smaller lineage dataframe

Version 0.5.0

This version adds:

• tango transfer function to transfer taxonomy from ORFs to contigs

This version drops the use of subject lengths for normalizing %id.

Version 0.4.2

Small update to change default rank_thresholds

Version 0.4.1

• Taxonomic ranks are now split into --assignranks and --reportranks. Rank specific thresholds are used only for the assignranks and taxonomy is then transferred to the reportranks.
• Updated thresholds to be in line with findings by Luo et al 2014.
• Do not use length normalization by default (it seems to work poorly)